G284045


Basic Information

Item Value
gene id G284045
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 62748428 ~ 62750633 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU322092
ccctgaacagcttctttATTTCTATCTCCAGCAATATTTACACAATTCAAAAAGAAATATGTGCTAACGGATTAAAATCACACAATTCTCAAACACACGATTACAAAGACAGATTCATTAAATATAAGAGTGGAGTACTCTGTGTATCACCGTATCATCATTACACTTACCATAAAACTCTTTTGGAGAGGAAAGTTATTCTCCAAAAGAAGTATTGTCAAGACAATGATATTCAGAGGAGTTAGTTGGCTAAAGCACACACAGATCATGAGACCAGGCTAATCAGAAATTGCTTCTCCAAGAGACTCACAGTCTTTCACTGTGAACTGGAACATTCTCACTGTGTGTTCAGTGGTGAGCTCCTCCCAGGCTGACTCCTGCCCAGGGTTATACTGCATACAGTCgtatacccttttcacactactacgccaaaccaagctgtactgggcttGCCCAGTTACACATCTCCCATAGTTGCTGGACCCATGTTGGAAAAAATAATGTGAAAAGAAAATATGCTGGCCAGCACAGTACTGTTTGGGTGAACCCTGTGGCGTTAAGCAGGCACTGGGTTCTCCAACTCTGGTCCTGGAAAGCTGCTGGGTGGGCAGTTGAAGACCCGTGCCTGAGTCTAgagctgtgtctgaaatggctcGAGTAGTGAGATAGAATCATAAAAAGGCTTCCCAGGTGAAACATCTAATGTAAGGCACttacagagcagtacagcattATATTGTAACACATACTATTTGAACATTTCAATAGAGCCAAATGTTCTCATACGTTGTTGTATTTTAGACAAGGTCCCTAAGCCCCTCAAATACCCAGCAAACACACAACAGGGGTGATATCTTCGGTCCTCGTACCAGCTCTCACATAGCTTCCTCTAACCAGCTTTCACAGAACAACACTACTAGCCTGGTGTTCCAGTCTTTTGGTGCTTTGGCCAACTCCTCTCTGAGTTCCTTCATTGTCACACAAAACATGTATGGCTTGACAATGATAGAGTAGTTGGCTACATTCATTATGGGAGAAGGCTAGAAGAGTTGactacagcacatacagtatgaaACCAGACTAGAAGAATGGTAGccagaggtggcaggtagcctagcggttaggagcattgggccagtaactgattggtctctggttcaaatccctgagctgactaggtgaaaagtcTCTCAATGTGTctttgagcaaggcacataaccctaattgctcctgtaagttacCCTaggtaagagcatctgctaactGACTAAAATGTAAGAGTTGGCTACAGTATGAAACCAGGCTAGAAGAGTTGGCTACAGTATGAAACCAGGCTAGAAGAGTAggctacaacacacacagtaagggCTTGATTCAATCTGTAGCACTGAAGATCAGTATTATATCATGGATCTTCAGCAATACGGATTAAATCAAACCCTAAATCATTGTAAAGAACCAAACAACGGTAACATTTCAAATAAAGGAGGGTCCATTTTATCCTAAATAATCTGGGAACTGTAGCCTGGTTGCTGTTCAGCCAATTACACGCCACTCCTTGTATTCATTGTCTTTCGCCAATCTTCAAATATGAACATTCTATCATTATGAGCTTGAGAAGATCAGAGGATTTGATCTTGATTCGATAACCGTCACAGTTATCCTCCAATCACAATGTAATTGTAAATCCAGTTTGCATTTTGAACTTTAGGAACGTCGACAAGCCAGTCTCTTTGGCAAATGAcaggagtggcaaggagtggaatgttagctaaaatgACAGGAACCCAGGTGAACTTCCCAGTACTTGTATACAGAGAAATAGGCCTACATTGTCTCGGTGCTGTTAAGTGGATGGAAAATATCACCCCTTTTTTAACGGATTACAAATGTGATCTTTAGAAGACACTGAGATACTACTGATTGGTCTCACTCTAACGTGGTGCTGAAAGTTAATAACCTCCAAACCACTATCTCACAGTTTTACAACTATAATCAGTTTAAGGCCTAAAGATTGGGATGGatctgtgtatgagtgtgtgcgtgtgtgttatggTAAACTGCTGGTTCTGGTTCTTCTCCATTGGAATCTCAGACGATCTAGGAGGATTTAGTCAGCAAGTTGCTGAGAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU322092 True 2133 lncRNA 0.42 2 62748428 62750633

Neighbor

gene id symbol gene type direction distance location
LOC110504398 LOC106586506 coding upstream 35688 62705451 ~ 62712740 (+)
LOC118964306 LOC106586506 coding upstream 47215 62698887 ~ 62701213 (+)
LOC110520352 LOC106586504 coding upstream 99913 62622919 ~ 62648515 (+)
LOC110504388 LOC106586502 coding upstream 135953 62598677 ~ 62612475 (+)
dhrs12 LOC106586499 coding upstream 200646 62543577 ~ 62547782 (+)
LOC110520355 LOC105016359 coding downstream 32613 62770924 ~ 62815230 (+)
LOC118964307 NA coding downstream 107580 62858213 ~ 62860498 (+)
LOC110520359 LOC106586511 coding downstream 196685 62947318 ~ 63007919 (+)
LOC110520363 NA coding downstream 363034 63113667 ~ 63119407 (+)
LOC110520364 LOC106586514 coding downstream 373747 63124380 ~ 63129015 (+)
G283867 NA non-coding upstream 25688 62722295 ~ 62722740 (+)
G283859 NA non-coding upstream 33245 62714856 ~ 62715183 (+)
G283860 NA non-coding upstream 34580 62713143 ~ 62713848 (+)
G283840 NA non-coding upstream 77940 62670211 ~ 62670488 (+)
G283836 NA non-coding upstream 84719 62663380 ~ 62663709 (+)
G284057 NA non-coding downstream 13288 62763921 ~ 62768887 (+)
G284091 NA non-coding downstream 73576 62824209 ~ 62824528 (+)
G284093 NA non-coding downstream 79052 62829685 ~ 62830227 (+)
G284095 NA non-coding downstream 80786 62831419 ~ 62831637 (+)
LOC110520346 htr2a other upstream 339571 62367489 ~ 62408857 (+)
LOC110520339 lrrc63 other upstream 551477 62193287 ~ 62200069 (+)
G282707 il-1rii other upstream 786953 61957388 ~ 61964066 (+)
G281996 NA other upstream 1711323 61033766 ~ 61037105 (+)
G284313 NA other downstream 265693 63016326 ~ 63022591 (+)
G284537 NA other downstream 516486 63267119 ~ 63312394 (+)
G284599 NA other downstream 640298 63390931 ~ 63391284 (+)
G284986 LOC106586530 other downstream 955935 63706568 ~ 63722064 (+)

Expression


Co-expression Network