G284968 (kctd4)


Basic Information

Item Value
gene id G284968
gene name kctd4
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63648938 ~ 63661435 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU323149
GTTCCAGTACACTAAGCTGACTTTCTAAGTTAACTAACTAAGCTAACTCTGTTACAGTTCTACGTCTGATACATTAGTTCCCAGTCTATTCTATTAAAGCGCTATGGTCAGCTCTGTCTGCCTTAATCAACTGTCATAATGTTGATGCAATTAAATATGATATACAAGTCCccttgtactgtatataatagaGTAGACACAAATGCCAGCATGACTTGTGGAAAATATTAGATAATATAATCATGCCGATATTCATGACTTTTATTTTGTGTGAAACAAAACATTCACATTTCCAAAATAACACACATTGTCACATACTCACTCACAGCACTTACAATCACAATGTTGGTGTCTGATTTGAAAATCTTCACTGCACATGCATCATGCTAGATTTGAACCTTTGGGTCTAAACTCTCTGTGCTTCTCTGCTGCAGGGCATTCACACTGACCTCCCTTCCATCTAGTCAGGCAAGTTACTGCAATTAAACAATAGTTTTTTTGTCCAATGATCAGCAACAGTCAGTCAGAGGTATAGTGTTCAACTGTacctctcccctcAGAATCCAGAGAAAGGCTTGGTCACACAACTCCACTCAAAACACAGCAACCGAAAACACACAATGTAATACCTCACGGTGCACTAAGGCTGGTTTGAAGGGGAAGCAGCCTGGATGGAAACAGCAGCTTATGTATGCGTAATTCAGTAGGGGACTGGTCCTCTGAGAGGTTGTGTTCTGTCCTGCAGCAGTGAGGGTGGATGATCTCTCTCTTGACTCTGAGGTTGGACTCCAGACAAAGTGCACAGAAATGACTGTCCTGCGTCAGTTTCAATCTAGGGGCTAGGTGTCAATCTGGAATCAGACAcctttctccttccctcatcCCTTCGTCTCCCTCTTGTTTCCCTCACTACCTACTGtacctgcccccctctctcccagtcttCCCCTCTATCCACCTCCCTGTTCATTCCCTTCCTGATCCTGCTCCCCCATCTTTCCCTCTTCCCTgcctctccccaccctctcttaCTTGACAAAGTGCAGAGCCTCTGCGGCCACCACAGATCCCTTGCTGCTGTCCAGAGAGCTGATTAGAGAGAAGCCAGCCTTCAGGGCCAGCATCACCGTCTCTAGCTTCAGACACTCCAGGGTACACaggaaggtactgtcctgtttcAGCACCAGCCTGGAGCCAGGGTCCGACTTGATGAAGTGGCGGAACTGGATCACGTTGGACGACACCTCAAACTCCTCCGGGAAGCCGTCCAGTCGGCTCTTTGAGATCTGAACCAGGCGCCCTTTGATCTTGTCGATGAAGGAGGGGTCGCTGCAGTACACCTTGAAGCCCTGCGACCTCTCGTCAGTCACCTCCAGGAAGGCGGGCTCCCGTTGCGCCGCCCGCATCCCCTCCCACTCTGAAATAGCCTCCACCAATCCGCTGAGGCGGTAGAACTCTGCTTCTCCTCTCAGAAGGCCCACCTCTCGGAAGTCGTCGGGCAGCTGCAGGTCTCCGGTCCGCAGGAAGTTGAGGATGTGTCTGAACACGGGGCCGTCGCGGTCGATGAAGGGGTTGCCCATGGAGTCAGTGTGCTGGATGGGCTTCCTGCCGCTGGCCAGCTCCTCCAACACTGACCCCTGGTGGCGGCTGAGGGTGGTGCGGTGTGCGGCATAGAGAAAGCCCCCCACGTTGAGAGTGATGGTGCCTGAGGAGGGCTTCTTGATGCTCTTGCTGGGCTGCAGCAGGTCTGTGTTGATCTGTCTCAGTTCACTGTCCATCCTTCTGAGGTTCCATTCCATGCCGCTCCCGCTCAACAACCGCACAGtctttttgtctgtgtgtgtgtcctcaggatAAGTGTGTAGCGTGCAgtaacaaagtgtgtgtgtgtgtgttagcgtatGGGAGCGTCACGGAGAGGTACTGGCATAGAGAGGAGTGCAGAGCGCACtggtaacagaatgagtc

Function

symbol description
kctd4 Predicted to act upstream of or within ion transport and protein homooligomerization. Is expressed in hindbrain; hypothalamus; and telencephalon. Orthologous to human KCTD4 (potassium channel tetramerization domain containing 4).

NR:

description
BTB/POZ domain-containing protein KCTD4-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU323149 True 1968 lncRNA 0.51 2 63648938 63661435

Neighbor

gene id symbol gene type direction distance location
serp2 NA coding upstream 123168 63519786 ~ 63525770 (+)
lacc1 lacc1 coding upstream 191367 63414756 ~ 63457571 (+)
LOC110520367 tnfsf11 coding upstream 414281 63225253 ~ 63234657 (+)
LOC110520366 akap11 coding upstream 444343 63173236 ~ 63204595 (+)
LOC110520364 LOC106586514 coding upstream 519923 63124380 ~ 63129015 (+)
LOC118944562 LOC106562846 coding downstream 226823 63888258 ~ 63889211 (+)
LOC110504443 fbxo47 coding downstream 233230 63894665 ~ 63900193 (+)
LOC110520383 LOC106586541 coding downstream 311244 63972679 ~ 63974476 (+)
LOC110520382 LOC106586539 coding downstream 719156 64380591 ~ 64382791 (+)
zgc:152951 glrx coding downstream 1193305 64854740 ~ 64861974 (+)
G284858 NA non-coding upstream 147531 63501174 ~ 63501407 (+)
G284646 NA non-coding upstream 178301 63470356 ~ 63470637 (+)
G284600 NA non-coding upstream 257221 63391453 ~ 63391717 (+)
G284975 NA non-coding downstream 13796 63675231 ~ 63720212 (+)
G284986 LOC106586530 non-coding downstream 45133 63706568 ~ 63722064 (+)
G284963 NA non-coding downstream 68275 63729710 ~ 63734409 (+)
G285001 NA non-coding downstream 81571 63743006 ~ 63745493 (+)
G285077 NA non-coding downstream 205748 63867183 ~ 63914056 (+)
G284599 NA other upstream 257654 63390931 ~ 63391284 (+)
G284537 NA other upstream 336544 63267119 ~ 63312394 (+)
G284313 NA other upstream 626347 63016326 ~ 63022591 (+)
LOC110504398 LOC106586506 other upstream 941968 62705451 ~ 62712740 (+)
G285203 NA other downstream 409997 64071432 ~ 64083982 (+)
G285763 NA other downstream 645077 64306512 ~ 64307360 (+)
G286679 NA other downstream 1447821 65109256 ~ 65109637 (+)

Expression


Co-expression Network