G284963


Basic Information

Item Value
gene id G284963
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63729710 ~ 63734409 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU323144
TTTTCTGGGATTTTGAATGCAGGTGAGGACTGGGAGGTCCAACCGCTGTCTTTAGCCTTGGAGCTTTCTGAAGAACCATCCTCCTTGGACAACAGGAGGCTGCTGCCAAAGATCTTCTGGAGAGAGTCGGTTCCGAAGAGGAACTTGGGAGGAGACATCACCATCTTAGAGGGGTTGAGAGGGCTGTGTGGTGTAGAAGTTGAGGCCTTGCTGTCAGGGGTGTGGAAAGTCTCAGAAGACAGCTCTGTCCGTTCTCTGGTGGTCTCCTCCAGGATGGCCACAGCAGCCTGTCCACACACTGTCATCCCTGGAGCTGTTTCTACCTCCTGAGGAAGGGTCTCACATGAGGCTATGGGCGTGACCAGAATCTCATTCTCTTGGGCGGTTTTAGCCTCGTCAAAGATGTCTCTGAAAGAGTTGGCCACATCCTGCAGTTTAAACCGCACTGCTAACTGCTCCACGTTTCCCTCAGCTACCTCAGCAAAGTCAATGGCACTCCAGACCCAGGCCTTCTCAGCACCCTTCATGGGCTCCAACTTCATAGAAGACGTGACCCAGTGGTTGGCGCAGATCTTCAGGACTTGGTCCCGCCTCATGAGAAGTCTGACCTGTTTGGTGTCGTAGTTCTGCAGTATCTTAAGGTCTCCGATGCCCCTCTCCTTCCACTGGTTCAGGTCTTTGTCATAGCGGTACAGCTTTGCTCTGTGGCTGAAACACACATTTTCATTCTCCTCTCCAGTGGAGATCTCCACCAGGTCTGGCAGGGGAACCACAGGCTCAAAGTACAGgccatccctctcctcttcctgggTCATGTCTTGCTCCTCGTCCACAGACACCCCGCTCTGGTTCAGCTTGGCCGGTGACTTGGTAGGACTGATGACAGGCTGGAAGCTGAAGTTAAAGCCAGCTGTGGATTCTCCAAAGCAGAAGAGGTTCTTCCTGATAGGGCTGCTTGCTAGGGGTGAGGTGTAGACAGATGTGTCAGCACTGTCGTCCAGAGCCTCCTCTCTCAGGTCATAGTTGTCCCATTCTAAGGTAGGACCAGTGCTCTCCACGTGGGGCTTGATGATCAGACCTGAGGTGTTACTGGCTGTTGTGATGTTAGCTTGGCTGTCGTCCTCCTTGATCTTTGTTTTGTCATCAGTCAGGAAGGATTTAAGGTCTTTCAGACCGGATTTCATCTCCTCTGCCTTCTGGATGAGATGTGCAGTTCTGCCTGTGTCAACAAGCTTGTGAGGAGTCTGCAGTGGGATGTCCAACAGGAGCCTCTGACACTCCTCAAACTTAAGCTTGAACTCCTCAGCCAGCTCAGGGGTTTTAAACTTGGCAGCGAGTTGCTCCAGTTTGGCATCTCCTTCTGAGAAGTCATTAGCAAGCCACATCCAAGCTTTGTCGGAACCAGCCAAGGGCTTCAAGTTCATGGTGGTGGTGATCCAGTGGTTGGCACACACCTTCAGGACCTGTTCTCTCCTCATCAGCACCCTCAGCCTGCCGTTGGTGGCATTCTTCAGGAACTTGAGGACTCCAACACCCCTCTCCTTCCACTGGCTGATGTCTCCGTCAAACCTGAAGAGCTTTACTCTCTGTGAGTAAAGTGCCTgttcatcctcctctcctgtgACCAGGTCCACTTTATCAGGCATCTGGACCACAGGTTCAAACTGGATATCATCATTCTCTTCTGTTTTGTATACATCCTCTTCATCCTGGTCAGCGGAAGTGTCTGCCCACTGGTTTGACTGAAGGGATGTGAACAGCTGCTCGCCACCGTGGGTGAAGTCTTTGCAATTGGAATCGGTCTGTCCAAACTTGAAGTCTCCTTGTGAGTTCTTAGCCAAATCTGCAAAACTGAAGTCATTGGGTTTGCCATTCTCATCGGTGTTGTCCACTGAAGGCACTGATGCAGGTATACCGACGCCAGAttccttctctttttctctgtgcTGCTCTGCGATATTCTTCAGGAACATGGACGCAGACCCTGAAGCAGGAGTCTGAGTTTCATCTGGTGGGGTTTCCTTTGCCGAATCTTGTGTGCCAAACTTAAAGCCACCTGCTGGGACGGGCATATTGAAAGAGAAGCCTGCAGCACTGGAGCCACTGCTTTCAGCCTGAGGGGTCTCAAACTTGAAGGATGCAGGGGCACATGTATCAACTTTGCTTGTGCCAAACTGAAAAGAGCTGTCATTGTTGAAGTTTGCTTTAAACACATTGCCTACAGGCTGAGTAGATGTACTTTGACTCCCAAGGCTAAAGCTGAAGGATGAGCTGGAGGGGGTGGCTGTGCTCTTAGTGTTGGGTGTCTGACAGGAGACACATTGACTAGCAGAGCTGTCGTTTCTGACTAGACATGTGTCACAGTCCCACTGTCCCCCCTGTTTGGCAAACATGGCCCCAAGAGAGGAGGTGTTGCTAGCGTTGGGTGTCTGGCAGGAAACACACTTAGAAACTGATGCATCATTCCTCACTAGACAGGTGTCACAGTCCCATTGTCTGTCCCTCTTAGCAAAAAGATCACCAAATCCCGACACTGTTGGCTTTGGTGGTGGTGCTACCTCAACTGTTGATTTTGCTGAGGGATTTGGAGTTTGACAAGAAACACAACTGTTTGAGGAGGCCTGGTTTCTTACAGCACACACGTCACAGTCCCACTGCCCTGGCTTTTTGCCAAACTGGGCACCAAATCCAGAGCCAAATGGCATGGTTGAGGGCTTTGATTCTGCTGCTACTTCTGCTGTGGTTTCTTTATTCTTACCAAACTGGGCTCCAAAACCAACAACAGGTATAGAAGTGGTGCCACTGGTTCCAAATGTAAAGGAGGAGGGTATCTGAGCTCCAAAAGCCCCAAATCCCTTTCCAATAGATCCTGCGCTGCTGGTGTCTTTTGACAAGTCAGCTCCAAATCCAAAAGTAAATCCTCTCACTGAAGCTGCCCCACTAGTAAAGCCTTTGGTTTCAGTAGCCagtttgctgtctgtctctgacaggGAATTAGGGTTGGCAGTCTGACAGGCAACACACTGCATAATTGTAGCAGCATTTCTTACATAACACACATTGCAGTGCCACTCCCCGTCCTTCTTTGCAAACTGGGCAGCAAAGTTTGTCACCTGAGGAGCAGATGAATTAGGAGAAGTTGCTTTCCTATCTGGCTGATCTTGCTGCTTTTCTGGAGATTTGGGAACTATCTTCTGAGCCTCTTCAAACTTTGTTTTGAAGAGCAATGCCTCGTCTGCCGTTTTATACCGGATGGCCAGTTGCTCAGGCCTTGGTTCCTCATCTGCATAATCAATGGCATTCCAAACCCAGGACTTGTCAGAGCCAGCAATTGGTTTCAGGAGCATATCTGGCGTGATGTAGTGGTTAGCACAGATCTTCAGAACCTGCTCCCTCCTCATCAGCAGACGCACTTTCCCTGATGTATTGTGCTTTAGGATTTTGACTATGCcgatccccctctctttccactcCTTTGTCTCTGCGTCAAATCTGAATAGCTTGGACCTGTTACAGAacatctcctcttcttcctcctctccagtcttCACATCTACTTTGTCAGGGAGGGGCACAATGGGCTCAAAGTGAGgcccatcctcatcctcctccacatGTGTGCTGTCGTTATCGCTCTCCGGTCCTTTCTCCACCGCTGTGTTTTCCAGCCCAAATACCGGCTTGGTCTGATCAGTGAAACTAAATGGCTGTTCAATTTTTTCAAACAGGTTTGGTTTGTCCCGACTCTGGGATGCATCAGTGAAGGAGAAGCCTGCCACACTTTTAGTGCCAAAGCTAAATATCCCTCCCTGGCTAAGAGACTCAACCTCTGAGGGGCCCTCCGATTTGGTGGGAATGTCTGATGTCAGAAGCCCCAACAGGTTCTCACTGTTTTTGGCTTTGAAGGTAAAGTCCCCATCGTTGGATTTGAAGTTGGAGTTGAATTTAAAGGCAGCAGATGATGGAGTGGACTGGGCTACTACTCCAGCACCAAAGCCAGGCACCTTAAGAGGCTCAGCAGGGACCTGCTGGCCAAAGGCGATCTTCCCAAAGTCCACAGGCTTCCCCTCAATGCTCTTTGGTGGTTGGACAGGTACGACTGAGGGCTTGGTGAAGTAGCCAGGCTCTGGGAGGGGAGGGTTGGTGGTGGGCTGAGAGTGGCCGTAGTATTCCTCGCTGTATGGGGAGAGTAGACTGGTTGCTGGTGACTCGAAGTGGAGGGGGGTGCCGAAGACCTGGTCTTGAGGAGGGTAGATGCAGGCTGGTGTTGACTGCAGGGGAGGAGTGTTAGTGGGCTGCTGGTAGGTATACATGTGCTGCTGGGGTGGCAGGCGGTTGACTCCATACACAGG

Function

NR:

description
E3 SUMO-protein ligase RanBP2-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU323144 True 4352 lncRNA 0.51 2 63729710 63734409

Neighbor

gene id symbol gene type direction distance location
gtf2f2b LOC105016382 coding upstream 47468 63625840 ~ 63682242 (+)
serp2 NA coding upstream 203940 63519786 ~ 63525770 (+)
lacc1 lacc1 coding upstream 272139 63414756 ~ 63457571 (+)
LOC110520367 tnfsf11 coding upstream 495053 63225253 ~ 63234657 (+)
LOC110520366 akap11 coding upstream 525115 63173236 ~ 63204595 (+)
LOC118944562 LOC106562846 coding downstream 153849 63888258 ~ 63889211 (+)
LOC110504443 fbxo47 coding downstream 160256 63894665 ~ 63900193 (+)
LOC110520383 LOC106586541 coding downstream 238270 63972679 ~ 63974476 (+)
LOC110520382 LOC106586539 coding downstream 646182 64380591 ~ 64382791 (+)
zgc:152951 glrx coding downstream 1120331 64854740 ~ 64861974 (+)
G284986 LOC106586530 non-coding upstream 7646 63706568 ~ 63722064 (+)
G284975 NA non-coding upstream 9498 63675231 ~ 63720212 (+)
G284968 kctd4 non-coding upstream 68275 63648938 ~ 63661435 (+)
G284858 NA non-coding upstream 228303 63501174 ~ 63501407 (+)
G285001 NA non-coding downstream 8597 63743006 ~ 63745493 (+)
G285077 NA non-coding downstream 132774 63867183 ~ 63914056 (+)
G285103 NA non-coding downstream 167160 63901569 ~ 63902513 (+)
G285155 NA non-coding downstream 257724 63992133 ~ 63992935 (+)
G285172 NA non-coding downstream 294897 64029306 ~ 64070900 (+)
G284599 NA other upstream 338426 63390931 ~ 63391284 (+)
G284537 NA other upstream 417316 63267119 ~ 63312394 (+)
LOC110520364 LOC106586514 other upstream 600752 63124380 ~ 63129015 (+)
G284313 NA other upstream 707119 63016326 ~ 63022591 (+)
G285203 NA other downstream 337023 64071432 ~ 64083982 (+)
G285763 NA other downstream 572103 64306512 ~ 64307360 (+)
G286679 NA other downstream 1374847 65109256 ~ 65109637 (+)
LOC110520396 LOC100136409 other downstream 1426982 65161342 ~ 65166580 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014240 NA coding CM030128.1 CM030128.1 6083387 ~ 6104883 (-)