G285968 (LOC106586578)


Basic Information

Item Value
gene id G285968
gene name LOC106586578
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64549527 ~ 64549951 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU324219
GCTTGGTTGGTAGTGATGGTCACCGCAGCATATTGCCTCATGGTTGGGGCTAACTGGGACACTCCATTCTGAGCCTCAATCTCGAAAGTGTAGTTGGTGTGAGCCAGCAGGTCTCCCACGGTAACAGTAGTGTTCTGCAGGCCCGCAGCACGGGGGAGGAACCGCACATTGCTGCGACATGCCTCACACACCCTCTGACCAGGCCTGCAGAGCTTACACAGCACTGTGAAGGTCACATCCTTACGACCCCCCGTGTCCTCTGGCCAGGACCAGTCCAGAATCACTGAGGTCTCGTTGATGACTGAGATCACATTA
>TU324222
GCTTGGTTGGTAGTGATGGTCACCGCAGCATATTGCCTCATGGTTGGGGCTAACTGGGACACTCCATTCTGAGCCTCAATCTCGAAAGTGTAGTTGGTGTGAGCCAGCAGGTCTCCCACGGTAACAGTAGTGTTCTGCAGGCCCGCAGCACGGGGGAGGAACCGCACATTGCTGCGACATGCCTCACACACCCTCTGACCAGGCCTGCAGAGCTTACACAGCACTGTGAAGGTCACATCCTTACGACCCCCCGTGTCCTCTGGCCAGGACCAGTCCAGAATCACTGAGGTCTCGTTGATGACTGAGATCACATTACGAGGAGCTGAGGGAGGACctggagagacagagcgacagagccagagcgagagagtgagcgagagagtgagcaagagagagagagcgagagagagagagagagagagaga

Function

NR:

description
PREDICTED: ephrin type-A receptor 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU324219 False 315 lncRNA 0.56 1 64549527 64549841
TU324222 True 425 lncRNA 0.56 1 64549527 64549951

Neighbor

gene id symbol gene type direction distance location
LOC110520382 LOC106586539 coding upstream 166736 64380591 ~ 64382791 (+)
LOC110520383 LOC106586541 coding upstream 575051 63972679 ~ 63974476 (+)
LOC110504443 fbxo47 coding upstream 649334 63894665 ~ 63900193 (+)
LOC118944562 LOC106562846 coding upstream 660316 63888258 ~ 63889211 (+)
gtf2f2b LOC105016382 coding upstream 867285 63625840 ~ 63682242 (+)
zgc:152951 glrx coding downstream 304789 64854740 ~ 64861974 (+)
insig2 LOC104950207 coding downstream 358695 64908646 ~ 64914396 (+)
marco marco coding downstream 464340 65014291 ~ 65029795 (+)
steap3 LOC106586584 coding downstream 583318 65133269 ~ 65146515 (+)
LOC110520396 LOC100136409 coding downstream 611391 65161342 ~ 65166580 (+)
G285954 NA non-coding upstream 24284 64524959 ~ 64525243 (+)
G285943 LOC106586535 non-coding upstream 46099 64502505 ~ 64503428 (+)
G285936 NA non-coding upstream 57894 64491368 ~ 64491633 (+)
G285932 NA non-coding upstream 65332 64483819 ~ 64484195 (+)
G285920 NA non-coding upstream 90712 64458570 ~ 64458815 (+)
G285969 NA non-coding downstream 1353 64551304 ~ 64551518 (+)
G285977 NA non-coding downstream 32128 64582079 ~ 64582302 (+)
G285995 NA non-coding downstream 68611 64618562 ~ 64619742 (+)
G286192 NA non-coding downstream 136290 64686241 ~ 64686570 (+)
G286195 NA non-coding downstream 138852 64688803 ~ 64689347 (+)
G285763 NA other upstream 242167 64306512 ~ 64307360 (+)
G285203 NA other upstream 465545 64071432 ~ 64083982 (+)
G285001 NA other upstream 804034 63743006 ~ 63745493 (+)
G284986 LOC106586530 other upstream 827463 63706568 ~ 63722064 (+)
G284599 NA other upstream 1158243 63390931 ~ 63391284 (+)
G286679 NA other downstream 559305 65109256 ~ 65109637 (+)
zmym2 LOC106586592 other downstream 710494 65260200 ~ 65311166 (+)
LOC118964312 LOC106586611 other downstream 1484469 66027633 ~ 66036299 (+)
G288252 NA other downstream 1999871 66549822 ~ 66550487 (+)

Expression


Co-expression Network