XLOC_022212


Basic Information

Item Value
gene id XLOC_022212
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 14735335 ~ 14738386 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044973
TTTATTTCAATCTCCACATTACAGCCACAGAAATCACACTCTCATCTCCAACCAAGCGAAAGTCAACATCACAAACACCTCCATCCTCTCGTTCATTCACTCAATTCTGGACACATCACTGTCAACTTCTCAACAAACAATAATGGTTCCAATAACGCAAGATAGTACAAAGATGATACAAGACATGCATCAAATCTCAACCAATGAAGTGACATGGAGGAAAAAAATTAGGGAAACACAATTTAAAGACCTTAACAAGGCCGAAAGTGTTGTTCTGAAAGGTAAATTGCGTGATCGTCAAAGCCGTACTGAATAATGAGATTATTGTAATGATGCTTTTCTAACACTGAAACATAATAAAGCAagtggagtttttttttgtttgtttattttttatttttttacacattttcttGGGTGTTTAGCTTAATATTCTGGCTTCAAAGCAACAGGCAGTCAGTGAAGTTAGAAAAACAGGAAACGGATAGACCAAAACGAACTCACGTAAAGTCATCGAAAGGAATGTGCAGCGCAGGACGACGCAATGATCCACATCATCTCTCCTGCCTCACAATAGTACAAACACACTCGCTTCTCCACAAAACAATGAAAACGCGTCAATGCAAGCGGGAAACTAAAGCCAAAGGAAATAAACACTGAGAGGTTCTAACTAACTTGATATGAAAGAAAAGACCGAAAGAAATTTGCACGAGACAGCCGATAAAAACAAACTCTGATTGCAGGCGTTTCATTTTGTAGATTTTACATTCGTTGATGCTTCTTTTCCCTCCCCCATTTCCCCAAATATACAATGAATATATACacattaaacttttaaaacaaaaaatccatTCTTGCTCTTATAAGGTTTTATACCATTTTATCAAAGTCTGATAAGCATTTAAAGGAATGCTCCACTTTTCTTTTGGAAATCGACTCATTTTTCATAAGTCCCCTAGAGTTCAACTTgagtttttaccatttttaaatccatgcAGCCAATCTGTGGGACTGGTGGGGCACTTttcgcttagcttagcatagatcattacaACAATCATTAGCATTTCactcaaaaaaactaaaataatgttgTTAATTTTACCATTTAAAGTTTGACACTTCTGTAGTTACACTATGTACTAAGACaaacagagattaaaaaaaagctattttctaAGCCCATATCGCCAATTATACTCTgccgtaataatcaaggaattttGCTGCCGTAGCATGGTTGCATCAGGCACAATTAAATGCAGCGGCCTGGAAAATAGAAacatttcattttctgtcagtcttacaTATTGCAACTACAAAAgagtcaaacattaaataaaataagatgctaacggtctaatccgattcaatgatttatgctaagctaatctaaaagtgctcccgccagacctggagattgtCTAAATTGACTCAGGGGCACTTAATATGAGCTGTTGCCATACTTGGCTCAATGGGCTCTTAGAAGTTTACAACAGAGCCTATTCCCTAAAATAGTTGAGTGTTCCTTCAAAGCGTCTGATTTTTGATGCTTATAATCCAAAATTATCGTTCCTATAAAGAAAGAAACAACCCCGAAATATAATTCAGAAACAATGTTTATCATGAATCAAGACAGTGAAGTTCCCTAGAAACAAGCCTGAATGATAGTCACCAAAGCCTGCAGTCGCATAACTGATAGCGAGAAGCTCGCCATTCCTTTTACGGAAAATTAACAAtggttttactacaaataaaacataatgaAACCATGGTAACCACAACTTAACCATGATTAAAGTAGTTTAACAGTTGGtagtaaaactgttttgtttatacAAATGATACCCAATATGCCAAACAAAACATGGCTAATGCACTTTTTCTATaataaaaccatggttaatttttgtaatttttgagTCATGTACTGTGAGGCTTAAACAGGAACAACGTCGCCGTAAAGTACCGCCATGTAAGCTTATAGTTGCGAGGTCAGCGAAAAAGACCCCATCCCTGACCCGATGAAGAGAACCACGGCGGTCAACCATTAAGCTTCGCGTTTTAAAAACTTCAATTTCTGCGTATAAAAACGGTACATAAAAAATATACGCTTTGTGCAGTACAAGTTAgtgcaattacatttttttccctcTTGTTCTTCTCATTGGCACTTAGTGAAGGTTGTGATTATGAGAGGGATGCTCTTTCCTTTCTGACCATGGTGAAAGAGAAGACAAAGCTGCTCTAAGCTGTGATTGAACTACATGATTTGATAGTTTCAGACATTTGGCAATGTGTTTTGAATCTGAACTGCTACGTTTGTCGGAAGCTACGATTTGAGTGCctgttttgttttggttctttaaaagctaaaacaagattaaaagggatagttcacttaaaactgAAAATTTCAGAAGAGATTTAAAAAATGGTGAAAACCAGTAAACATTAGCATCTATAGTAGGgacaaaaaaaaaggtaataaaaaaaaaattAGGGCCCTTTAAAATAAAGGATTTTAAAGTGTACAATTCTTGCACATTTTGGGACCCCATGATCATTTGTGCAGGAAATTTGCCTGCTGTCAAAAAGCACATTACCATCGAAAAGgatcatccctatgccctaatccagTGGTGTTAAAAGTGATATTGCAGAAAAAATGGTATTGTCAAACATGTTTC

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0072068 late distal convoluted tubule development biological_process
GO:0048731 system development biological_process
GO:0008152 metabolic process biological_process
GO:0043009 chordate embryonic development biological_process
GO:0030154 cell differentiation biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0072017 distal tubule development biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0042670 retinal cone cell differentiation biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0005853 eukaryotic translation elongation factor 1 complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044973 True 2690 lncRNA 0.36 2 14735335 14738386

Neighbor

gene id symbol gene type direction distance location
XLOC_022211 NA coding downstream 151796 14574498 ~ 14583539 (-)
XLOC_022210 CR388373.2 coding downstream 320122 14407888 ~ 14415213 (-)
XLOC_022209 nkain4 coding downstream 331396 14265122 ~ 14403939 (-)
XLOC_022208 ddx23 coding downstream 518829 14193547 ~ 14216506 (-)
XLOC_022206 adcy6a coding downstream 676250 13940958 ~ 14059085 (-)
XLOC_022213 gss coding upstream 4701 14743087 ~ 14769523 (-)
XLOC_022214 sla2 coding upstream 69835 14808221 ~ 14990921 (-)
XLOC_022215 phf20b coding upstream 254414 14992800 ~ 15036789 (-)
XLOC_022216 si:ch211-218g4.2 coding upstream 308158 15046544 ~ 15090782 (-)
XLOC_022217 BX537335.1 coding upstream 369462 15107848 ~ 15107962 (-)
XLOC_022207 BX897727.1 non-coding downstream 745853 13989364 ~ 13989482 (-)
XLOC_022203 NA non-coding downstream 911143 13818507 ~ 13824192 (-)
XLOC_022202 NA non-coding downstream 925738 13806359 ~ 13809597 (-)
XLOC_022219 NA non-coding upstream 694027 15432413 ~ 15563597 (-)
XLOC_022220 NA non-coding upstream 952145 15690531 ~ 15697049 (-)
XLOC_022221 NA non-coding upstream 958141 15696527 ~ 15764318 (-)
XLOC_022224 BX511184.1 non-coding upstream 1207768 15946154 ~ 15951976 (-)

Expression


Co-expression Network