XLOC_022218 (sulf2b)


Basic Information

Item Value
gene id XLOC_022218
gene name sulf2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 15203822 ~ 15330230 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043864
GACAGATGAGTAagtgctgtgagtgtgtgtggagtgtTTCCAGCATTATCTGCTTCTCAAGGATCCCGTTAAGATGGTCCCGTAGCCCTTCATGCTCCATATCTGGATATTTGTACTTTAATGTGGGATGAGCAAGACATCGACACCATGAGGTGCGAGAGGGTGAAGTTGGTGTAGTGTGAGCGAGAGCCCGTCGCGGGTCACAGTTTTAGTGGTGGTGATGGCGGCACATGGACTTGCGGCTCGACTCTTGCCACTGCTGCTGCTGACCATGTTGGCAGTAGCTCATGCCTCCATCTTCCTGTCCAATCAGAGACTCAAACCTCGATTCCAACGAGACCGTCGAAACATCCGGCCCAACATCATCCTTATCCTCACTGATGATCAGGACATTGAGTTGGGCTCCATGCAGGTCATGAATAAGACCCGGCGGATCATGGAACAGGGTGGAACGCACTTTTCCAATGCGTTTGTCACCACACCCATGTGCTGTCCGTCACGCTCCTCCATGCTGACGGGGAAATATGCCCACAACCACAACACCTACACCAACAACGAGAACTGCTCTTCGCCCTCTTGGCAGGCCCAGCATGAGCCGCGCACTTTTGGAGTTTATCTCAACAACACCGGCTACAGGACAGcattctttggGAAGTATCTGAATGAGTATAACGGTACTTACATTCCCCCGGGCTGGAAAGAGTGGGTCGCAATGGTGAAGAATTCCCGCTTCTACAACTACACCCTGTGCAGGAACGGTGTCCGAGAGAAACATGGATTTGAATACCCAAAGGACTACCTGACAGATCTCATAACCAACGACAGCATCAATTACTTCCGCATGTCAAAGAAGATTTACCCACACAGACCCGTCCTGATGGTGATCAGTCATGCTGCCCCTCACGGCCCAGAGGATGCGGCCCCACAGTACACGACTGCCTTCCCCAATGCATCCCAGCACATAACGCCCAGTTATAACTACGCCCCTAATCCGGACAAACACTGGATTATGCGCTACACCGGCCCCATGAAGCCCATTCACATGGAGTTCACTAACATGCTGCAGCGCAAGAGGCTGCAGACGCTGCTGTCCGTGGATGACAGTGTGGAGAAGGTATATAACATGTTGGTGGACACTGGGGAGCTGGACAACACATATGTGATCTACACTGCAGACCATGGATACCACATCGGTCAGTTCGGCCTAGTCAAGGGCAAATCCATGCCTTACGAGTTCGACATCAGAGTTCCCTTCTACATTCGTGGCCCTAATGTGGAGGCAGGAGGCATCAACCCCCACATAGTTTTGAACATAGACTTGGCCCCCACCATCCTGGACATCGCTGGCATGGATGTtcctccagatatggatggcaaATCCATCCTCAAGCTTCTGGACACAGACCGCATGATGAACAGGTTCCAGCTCAACAAGAAAGGCAAAGTGTGGAGGGACTCGTTCCTGGTGGAGAGAGGGAAACTGCTGCACAAAGTGTTGAATGATGGGAAAGATATGGCTGAGGAGGAGAACTACCTCCCCAAATACCAGCGTGTTAAAGACCTGTGCCAGCGAGCCGAGTACCAGACGCCATGTGAACAGATTGGGCAGAAGTGGCAGTGTGTTGAAGATGCCACAGGGAAGCTGAGGTTGTCTAAATGTAAAGGCATGTCCAGTCTGAGCGCAGTGCAGAAGCCGTCCGTCTCCAGCATCAAATCCCAGCTTTACCTGCAGAGCATCAGCACTCCTGATGTCAGCCTTAATTCAGAGCCGCAAGAATGCAACTGCCAGCCCAAGAGTTACAGACTGAGCACTTACTCCAAGAGCAAACTCTTCTCCAAAAAGAAGATGAAGTCTCTAAAGAGCTTCTCCAGGAACCGTTTCGCTCGAGCCCTGTCCATGGAGACTGGAGGAGATCTATATGCGGTGGATCTGGACAATGAGCACAGGAACCTCAGTCTGAGGCTCAGCACTGCGGATGAGGATGAGGAGTTCAGTGGGGCAGAGCCCACCACCATCAGCCAAAGCAACAGTCTGAGTGTGCCCTCCTCCATCAAAGTCACTCACAGatgctCCATTCTGGCCAATGAAACAGTCAAGTGTGACGTGGGTCTCTACAAATCACTGCAGGCCTGGAAAGACCACAAGCTGCACATCGACCATGAAATCGAGACCCTCCAAACCAAGATTAAAAACCTGCGTGAAGTCCGGGGTCACCTGAAAAAGGCACGACCTGAAGAATGTGACTGCAACAAATACTATTACAAATCCAAGTACAAGAGTAAGCTGAGGAAATACAAAACAGGAAATGTCCACCCTttcagAAAAGGACAGGAGAAGGATAAGAAGGCATGGATGATGCTGGAGCAGAAGCGCAGGAAGAAGCTGAGGAAGCTGTTGAAGCGTCTGCGTAACAATGACACCTGCAGCATGCCCGGCCTCACCTGCTTCACACATGACAACCAGCACTGGCAGACTGCTCCATTCTGGACACTGGGGCCATTTTGTGCATGCACTAGTGCCAATAACAACACCTACTGGTGCATGAGGACCATTAATGAGACGCACAACTTTCTCTTCTGCGAGTTTGCCACTGGCTTTCTGGAGTACTTTGACATCAACACAGATCCATATCAGTTGGTGAACGCGGTAAACACACTGGACCGGTACGTCCTCAATCAGCTGCACGTTCAGCTCATGGAGCTCAGAGGCTGTAAGGGACACAAGCAGTGTAACCCTCGCACCCGCAGCCTCGACATggGGGGTAAAGAGAGAAGCAGCTATGATGAATACAGGCAGTTTCAGCGCCGGAAATGGCCTAAAGTGAGGAAGCCTGTCTCCAAATCGCTAGGACAGATTTGGGAAGGATGGGAAGGCTAATGTTTGGAATGATGAGGACGTCCCGGAAGACACCAACCTGTTTCCCGGCGAGTCGAACTGGTCCGAACTTGAACCTTTGTACAGACTTGATGAACACGCCTACGATCTCAAACTCAACTTCACCCTCAGCCTCGAGGACTGGGCTCATTTCAGCCACTCCGTGGACCAAATGTTCACCCTCCTCAGCAACGACAACCAGCCGTACACTCCACCGCACTCTGAAGACAGACTAACAGGACGAGGCCACGCCCTTGTGTCCTCAAGCCAATCAGCTTCAGCTATCTACCTGACAACTCTGGCCACGCCTGCTCTTTTGCTGAGAGAAGCAGGTGCTGAGGTTTTGAGAGACGCTTTGGGGCTCAACCAACAGGAACAACATCCATCAAATTCCGTACAACCTATCGGTTCACAAGTGGACAAATCAAGCCTGGATGCTCCTCTTGGAGACCTAAAAGAggacagagagaaagaaaggagggacgaagaagaagaggaggagttAAGGACAGGAAGGTTAAGCTCCACTCACTGTGACTGCAATGAGATTTTGCAGGAAACGGGTTgacttttgtgttttatttctcttGCTCATACCGTTCCTCCTCAGAAAGACTTTTTCGATGGATGTTTAATACCAGCGTACAGTGCTTCAGGTTGATTGTCGTCTCCTGTATTTGTTCCTAGCCTCAGAAATTTCCTGCAACACTCGGTCTGTTTTCTCATTCTGTCCATGAGATCGACTAGGCTTTGAATGGAGCACATCTTCTACCTTTTAACTTAGAGTCTTCTCTCTGTTTTTATTCTttgatctttttgtttttttaaagggatttGGGGACTTAAATTCATAGCAGTAAAACTTCACAAAGAAGTGAGTCGTTGTGTCTGTTCATACTTGATCCAGTTTGAAACCGGTTTGGCAGCAGAATCTTTGCTTTTCTTTTGCTGGTTTTCTACAGGAAGCGTCTCGCTTCTCTCTTACACAGCCTTACAACTTCACAAACACCACCTCAAATACTGTAGGTCaatgacaagtgtgtgtgtgagtgtgagtgtgaactTGGTGTAATCAAATATGAATATGAGTGTGTTAAAATTGAGCtttttgatttgattggttgcGCCCATTGTGTTACAGTTTGTTTACACTTAAATATTGGACCATTTTTTGGTCCGTTTGTATAGAATAATCTAAATTTCTTAAACAGTTTATAAGTTGAACCAACTAATCACTCAAAAATGGTTTGTTTGATGTATTTGTCATTAATTGTGTTTGACTAAAATGTGTTTCCCCTCGAGCACACCGGGAAAGAAATGTTGATGTATCGAACATGACTCATCATATTTGTAACCTTAACTTGATCTTATAAAATGTTTTCGCTTTTCACGACGCTACTAATACCAGAGCAAATATATGAAATGGATGTATgtattttaatgtgtgttttgcaaatgtaaatggtTAAAGGATATTTTTATTACACGTTTGATGCTAAACCGACCGCCAGCCATAAAGATTTCACTCCAGCTTcgagttttattatttatgcagcatatttttttaacagttcTTTAATACACATGTCCAGATTTATTTTATGGTGACGTATCTGagattgtttaaattattaatctGCCTTTCCCTTTTGTTTCATCCATTGCTGTTTTGAGATTATAATGATCATAATCTGATCCTCGATCTTACACTTCAtcagttcactgtaaaaaaaaaaaaaaaaaaaaaaagggtttcacggaattcattcatattgtcccaacacaaatcgattaaataACAATTAAGTGGATTAAGCATAAAACAGTTAGGTTGTCCCGACCAAAATCCTCAAgaattgtttcagcttattttaaatatgtaatttgacTGTGTGTTTACATATTTCATCATATCCACCCCTCACCTCTGTGAGTGGCTGTACTAAAAGCAGTTTTGTCTAAGATTGTGGTTGTTTTGAAAACCATCAGAATTGcttaaaagtgtaaaaaatgGAGGATGTGAGATGTTTAGGAGACTCTTATGGAAGGATACATTTTCCTCTGGCACTTTCAAAAGGAAGGCTTTTTTCTTAAAATAGGATTTAAAAGAAATGAGAGATGGTTTAAACATAAAGTCTTGTACAGTTCTATAGATTTATCATACCTATATTTTTGTTTCGGTTTACCAGTGACCATTTGATAGTGCTCATTACTTTGTGAATAAAGTGTTGAATGCCCA
>TCONS_00043865
TGAAAAAGGCACGACCTGAAGAATGTGACTGCAACAAATACTATTACAAATCCAAGTACAAGAGTAAGCTGAGGAAATACAAAACAGGAAATGTCCACCCTttcagAAAAGGACAGGAGAAGGATAAGAAGGCATGGATGATGCTGGAGCAGAAGCGCAGGAAGAAGCTGAGGAAGCTGTTGAAGCGTCTGCGTAACAATGACACCTGCAGCATGCCCGGCCTCACCTGCTTCACACATGACAACCAGCACTGGCAGACTGCTCCATTCTGGACACTGGGGCCATTTTGTGCATGCACTAGTGCCAATAACAACACCTACTGGTGCATGAGGACCATTAATGAGACGCACAACTTTCTCTTCTGCGAGTTTGCCACTGGCTTTCTGGAGTACTTTGACATCAACACAGATCCATATCAGTTGGTGAACGCGGTAAACACACTGGACCGGTACGTCCTCAATCAGCTGCACGTTCAGCTCATGGAGCTCAGAGGCTGTAAGGGACACAAGCAGTGTAACCCTCGCACCCGCAGCCTCGACATggAGGACAGATTTGGGAAGGATGGGAAGGCTAATGTTTGGAATGATGAGGACGTCCCGGAAGACACCAACCTGTTTCCCGGCGAGTCGAACTGGTCCGAACTTGAACCTTTGTACAGACTTGATGAACACGCCTACGATCTCAAACTCAACTTCACCCTCAGCCTCGAGGACTGGGCTCATTTCAGCCACTCCGTGGACCAAATGTTCACCCTCCTCAGCAACGACAACCAGCCGTACACTCCACCGCACTCTGAAGACAGACTAACAGGACGAGGCCACGCCCTTGTGTCCTCAAGCCAATCAGCTTCAGCTATCTACCTGACAACTCTGGCCACGCCTGCTCTTTTGCTGAGAGAAGCAGGTGCTGAGGTTTTGAGAGACGCTTTGGGGCTCAACCAACAGGAACAACATCCATCAAAT
>TCONS_00043866
ATGGCGGCACATGGACTTGCGGCTCGACTCTTGCCACTGCTGCTGCTGACCATGTTGGCAGTAGCTCATGCCTCCATCTTCCTGTCCAATCAGAGACTCAAACCTCGATTCCAACGAGACCGTCGAAACATCCGGCCCAACATCATCCTTATCCTCACTGATGATCAGGACATTGAGTTGGGCTCCATGCAGGTCATGAATAAGACCCGGCGGATCATGGAACAGGGTGGAACGCACTTTTCCAATGCGTTTGTCACCACACCCATGTGCTGTCCGTCACGCTCCTCCATGCTGACGGGGAAATATGCCCACAACCACAACACCTACACCAACAACGAGAACTGCTCTTCGCCCTCTTGGCAGGCCCAGCATGAGCCGCGCACTTTTGGAGTTTATCTCAACAACACCGGCTACAGGACAGcattctttggGAAGTATCTGAATGAGTATAACGGTACTTACATTCCCCCGGGCTGGAAAGAGTGGGTCGCAATGGTGAAGAATTCCCGCTTCTACAACTACACCCTGTGCAGGAACGGTGTCCGAGAGAAACATGGATTTGAATACCCAAAGGACTACCTGACAGATCTCATAACCAACGACAGCATCAATTACTTCCGCATGTCAAAGAAGATTTACCCACACAGACCCGTCCTGATGGTGATCAGTCATGCTGCCCCTCACGGCCCAGAGGATGCGGCCCCACAGTACACGACTGCCTTCCCCAATGCATCCCAGCACATAACGCCCAGTTATAACTACGCCCCTAATCCGGACAAACACTGGATTATGCGCTACACCGGCCCCATGAAGCCCATTCACATGGAGTTCACTAACATGCTGCAGCGCAAGAGGCTGCAGACGCTGCTGTCCGTGGATGACAGTGTGGAGAAGGTATATAACATGTTGGTGGACACTGGGGAGCTGGACAACACATATGTGATCTACACTGCAGACCATGGATACCACATCGGTCAGTTCGGCCTAGTCAAGGGCAAATCCATGCCTTACGAGTTCGACATCAGAGTTCCCTTCTACATTCGTGGCCCTAATGTGGAGGCAGGAGGCATCAACCCCCACATAGTTTTGAACATAGACTTGGCCCCCACCATCCTGGACATCGCTGGCATGGATGTtcctccagatatggatggcaaATCCATCCTCAAGCTTCTGGACACAGACCGCATGATGAACAGGTTCCAGCTCAACAAGAAAGGCAAAGTGTGGAGGGACTCGTTCCTGGTGGAGAGAGGGAAACTGCTGCACAAAGTGTTGAATGATGGGAAAGATATGGCTGAGGAGGAGAACTACCTCCCCAAATACCAGCGTGTTAAAGACCTGTGCCAGCGAGCCGAGTACCAGACGCCATGTGAACAGATTGGGCAGAAGTGGCAGTGTGTTGAAGATGCCACAGGGAAGCTGAGGTTGTCTAAATGTAAAGGCATGTCCAGTCTGAGCGCAGTGCAGAAGCCGTCCGTCTCCAGCATCAAATCCCAGCTTTACCTGCAGAGCATCAGCACTCCTGATGTCAGCCTTAATTCAGAGCCGCAAGAATGCAACTGCCAGCCCAAGAGTTACAGACTGAGCACTTACTCCAAGAGCAAACTCTTCTCCAAAAAGAAGATGAAGTCTCTAAAGAGCTTCTCCAGGAACCGTTTCGCTCGAGCCCTGTCCATGGAGACTGGAGGAGATCTATATGCGGTGGATCTGGACAATGAGCACAGGAACCTCAGTCTGAGGCTCAGCACTGCGGATGAGGATGAGGAGTTCAGTGGGGCAGAGCCCACCACCATCAGCCAAAGCAACAGTCTGAGTGTGCCCTCCTCCATCAAAGTCACTCACAGatgctCCATTCTGGCCAATGAAACAGTCAAGTGTGACGTGGGTCTCTACAAATCACTGCAGGCCTGGAAAGACCACAAGCTGCACATCGACCATGAAATCGAGACCCTCCAAACCAAGATTAAAAACCTGCGTGAAGTCCGGGGTCACCTGAAAAAGGCACGACCTGAAGAATGTGACTGCAACAAATACTATTACAAATCCAAGTACAAGAGTAAGCTGAGGAAATACAAAACAGGAAATGTCCACCCTttcagAAAAGGACAGGAGAAGGATAAGAAGGCATGGATGATGCTGGAGCAGAAGCGCAGGAAGAAGCTGAGGAAGCTGTTGAAGCGTCTGCGTAACAATGACACCTGCAGCATGCCCGGCCTCACCTGCTTCACACATGACAACCAGCACTGGCAGACTGCTCCATTCTGGACACTGGGGCCATTTTGTGCATGCACTAGTGCCAATAACAACACCTACTGGTGCATGAGGACCATTAATGAGACGCACAACTTTCTCTTCTGCGAGTTTGCCACTGGCTTTCTGGAGTACTTTGACATCAACACAGATCCATATCAGTTGGTGAACGCGGTAAACACACTGGACCGGTACGTCCTCAATCAGCTGCACGTTCAGCTCATGGAGCTCAGAGGCTGTAAGGGACACAAGCAGTGTAACCCTCGCACCCGCAGCCTCGACATggGGGGTAAAGAGAGAAGCAGCTATGATGAATACAGAGGACAGATTTGGGAAGGATGGGAAGGCTAA
>TCONS_00043867
GGGTGGAgaaaaggaaagagagagagagagaaggataaAGCTACAGCGCACTGACCTACACAGACAGATGAGTGCGAGAGGGTGAAGTTGGTGTAGTGTGAGCGAGAGCCCGTCGCGGGTCACAGTTTTAGTGGTGGTGATGGCGGCACATGGACTTGCGGCTCGACTCTTGCCACTGCTGCTGCTGACCATGTTGGCAGTAGCTCATGCCTCCATCTTCCTGTCCAATCAGAGACTCAAACCTCGATTCCAACGAGACCGTCGAAACATCCGGCCCAACATCATCCTTATCCTCACTGATGATCAGGACATTGAGTTGGG

Function

symbol description
sulf2b Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Acts upstream of with a positive effect on epithelial structure maintenance. Predicted to be located in Golgi stack and extracellular space. Predicted to be active in cell surface; endoplasmic reticulum; and plasma membrane. Is expressed in several structures, including central nervous system; head; neural rod; segmental plate; and somite. Orthologous to human SULF2 (sulfatase 2).

GO:

id name namespace
GO:0032836 glomerular basement membrane development biological_process
GO:0060348 bone development biological_process
GO:0014846 esophagus smooth muscle contraction biological_process
GO:0060384 innervation biological_process
GO:0010669 epithelial structure maintenance biological_process
GO:0030177 positive regulation of Wnt signaling pathway biological_process
GO:0002063 chondrocyte development biological_process
GO:0030201 heparan sulfate proteoglycan metabolic process biological_process
GO:0035860 glial cell-derived neurotrophic factor receptor signaling pathway biological_process
GO:0040037 negative regulation of fibroblast growth factor receptor signaling pathway biological_process
GO:0010575 positive regulation of vascular endothelial growth factor production biological_process
GO:0048706 embryonic skeletal system development biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005795 Golgi stack cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0008449 N-acetylglucosamine-6-sulfatase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005539 glycosaminoglycan binding molecular_function
GO:0008484 sulfuric ester hydrolase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004065 arylsulfatase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-775 Predicted to enable N-acetylglucosamine-6-sulfatase activity and glycosaminoglycan binding activity. Acts upstream of with a positive effect on epithelial structure maintenance. Predicted to be located in Golgi stack and extracellular space. Predicted to be active in cell surface; endoplasmic reticulum; and plasma membrane. Is expressed in several structures, including central nervous system; head; neural rod; segmental plate; and somite. Orthologous to human SULF2 (sulfatase 2).

Ensembl:

ensembl_id ENSDARG00000013838

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043864 False 5114 mRNA 0.46 21 15203822 15330168
TCONS_00043865 False 962 mRNA 0.51 6 15205670 15216654
TCONS_00043866 False 2604 mRNA 0.51 19 15206058 15284757
TCONS_00043867 True 321 mRNA 0.53 2 15284576 15330230

Neighbor

gene id symbol gene type direction distance location
XLOC_022217 BX537335.1 coding downstream 95860 15107848 ~ 15107962 (-)
XLOC_022216 si:ch211-218g4.2 coding downstream 113040 15046544 ~ 15090782 (-)
XLOC_022215 phf20b coding downstream 167033 14992800 ~ 15036789 (-)
XLOC_022214 sla2 coding downstream 212901 14808221 ~ 14990921 (-)
XLOC_022213 gss coding downstream 434299 14743087 ~ 14769523 (-)
XLOC_022219 NA coding upstream 102183 15432413 ~ 15563597 (-)
XLOC_022220 NA coding upstream 360301 15690531 ~ 15697049 (-)
XLOC_022221 NA coding upstream 366297 15696527 ~ 15764318 (-)
XLOC_022222 eef1a2 coding upstream 520708 15850938 ~ 15878879 (-)
XLOC_022223 mrgbp coding upstream 569463 15899693 ~ 15916391 (-)
XLOC_022212 NA non-coding downstream 465436 14735335 ~ 14738386 (-)
XLOC_022211 NA non-coding downstream 620283 14574498 ~ 14583539 (-)
XLOC_022210 CR388373.2 non-coding downstream 788609 14407888 ~ 14415213 (-)
XLOC_022207 BX897727.1 non-coding downstream 1214340 13989364 ~ 13989482 (-)
XLOC_022224 BX511184.1 non-coding upstream 615924 15946154 ~ 15951976 (-)
XLOC_022226 NA non-coding upstream 1186752 16516982 ~ 16518846 (-)

Expression


Co-expression Network