G286775 (LOC107756720)


Basic Information

Item Value
gene id G286775
gene name LOC107756720
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65234814 ~ 65235740 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU325127
agaacggatgtactcaaggttcctatggtcagtccaaacgacaaaaggaacggtcgccccctccaaccactgtcgccattcgcctagggctaaccggatggcgagcagttcgcggttacccacatcatagttacgttccgacggcgacaggcgatgagaaaaatacgtgcatgggtggaccttgtcgtcagagagggagcgctgagaaaggatggctcccacgcccacctctgacgcgtcaacctcgacaacgaactgtctagagacgtcaggtgtaacaaggataggagcggatgtaaaacgattcttgaggagatcaaaagctccctgggcggaaacggaccacttaaagcacgtcttgacagaagtaagggctgtgagaggagctgccacctgaccgaaattacggatgaaacgacgatagaagtttgcgaagccgagaaagcgctgcagctcgacgcgtgacttagggacgggccaatcaatgacagcttggaccttagcgggatccatcttaatgccttcagcggaaataacagaaccgagaaatgtgacggaggaggcatgaaaagtgcacatctcagccttcacaaaaagacaattctctaaaaggcgctggaggacacgtcgaacgtgctgaacatgaatctggagtgacggtgaaaaaatcaggatatcgtcaaggtaaacgaaaacaaagatgttcagcatgtctctcaggacatcattgactaatgcctgaaagacagctggagcgttagcgaggccgaaaggaagaacccggtattcaaagtgccctaacggagtgttaaacgccgtcttccactcgtccccctccctgatgcgcacgagatggtaagcgttacgaaggtccaacttagtgaaaaacctggctccctgcaggatctcgaaggctgaagacataag

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325127 True 927 lncRNA 0.52 1 65234814 65235740

Neighbor

gene id symbol gene type direction distance location
LOC118964311 LOC106586591 coding upstream 3469 65217057 ~ 65231345 (+)
LOC110520399 LOC106586589 coding upstream 22000 65192057 ~ 65212814 (+)
tmem37 tmem37 coding upstream 60478 65170904 ~ 65176413 (+)
LOC110520396 LOC100136409 coding upstream 68234 65161342 ~ 65166580 (+)
steap3 LOC106586584 coding upstream 88299 65133269 ~ 65146515 (+)
LOC110520400 NA coding downstream 5550 65241290 ~ 65242647 (+)
zmym2 LOC106586592 coding downstream 24460 65260200 ~ 65311166 (+)
ift88 ift88 coding downstream 126996 65362736 ~ 65386706 (+)
LOC110520411 NA coding downstream 253466 65489157 ~ 65491432 (+)
popdc2 popdc2 coding downstream 256219 65491959 ~ 65503791 (+)
G286739 NA non-coding upstream 2200 65232222 ~ 65232614 (+)
G286734 NA non-coding upstream 2963 65231470 ~ 65231851 (+)
G286772 NA non-coding upstream 18989 65215426 ~ 65215825 (+)
G286769 NA non-coding upstream 47560 65186980 ~ 65187254 (+)
G286765 NA non-coding upstream 52715 65181882 ~ 65182099 (+)
G286777 NA non-coding downstream 15343 65251083 ~ 65251369 (+)
G286790 NA non-coding downstream 55726 65291466 ~ 65334118 (+)
G286791 NA non-coding downstream 65148 65300888 ~ 65301795 (+)
G286726 LOC106582068 non-coding downstream 158636 65394376 ~ 65394785 (+)
G286824 xpo4 non-coding downstream 171996 65407736 ~ 65410917 (+)
G286679 NA other upstream 125177 65109256 ~ 65109637 (+)
G285763 NA other upstream 927454 64306512 ~ 64307360 (+)
G285203 NA other upstream 1150832 64071432 ~ 64083982 (+)
G285001 NA other upstream 1489321 63743006 ~ 63745493 (+)
LOC118964312 LOC106586611 other downstream 798680 66027633 ~ 66036299 (+)
G288252 NA other downstream 1314082 66549822 ~ 66550487 (+)
G288430 NA other downstream 1495546 66731286 ~ 66733797 (+)
LOC110505407 LOC106586622 other downstream 1547633 66783373 ~ 66787442 (+)

Expression


Co-expression Network