G286869 (LOC106586566)


Basic Information

Item Value
gene id G286869
gene name LOC106586566
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65481281 ~ 65482260 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU325234
GCTCGATGAAGAACATGCGGTCTCCGGGTGCATTCTGTTGGaagatgacatcatcctcttggAAGACTTCATGCTGAAACTGGAGGAGAACGGTGTTCAGGAAGTTGACGTCTCGGTTCTGGAACATGGGTACGTTGTTCAGCAGGCTCAAACACATCACTGTCAGAATCTCCTCTCTCAAAGCTGAGGAGACTGAAATTAGAAAGTTCTTTTCGTCAAACCATCTCCCCCCATATCGGGCCCCGTAGTACTTCTGGATTCGAAGTCGAAGGTCGTTAGGAAGCTTCAAGAAGGTCATGTAGTCGTCTAGATGATTCATCTTGTCTTTGTAGGCCTTTGCTGCTTGGTCTACGTTGGTTATGATGGCAGCAGCGTTGGCCACCAGTACAGTGTACATTAGAGCCCCAGACAGCATACTGGTCATGACCACCCACAGCTCCACCTCATCTAGGGAGCAAAACACCCGGTACACACATAAATACAGTGTAAAACTTGGCTATTGAACTCCGGGCACTACAGTCTTGGAATAGCACGGG

Function

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325234 True 536 lncRNA 0.49 3 65481281 65482260

Neighbor

gene id symbol gene type direction distance location
ift88 ift88 coding upstream 94575 65362736 ~ 65386706 (+)
zmym2 LOC106586592 coding upstream 170115 65260200 ~ 65311166 (+)
LOC110520400 NA coding upstream 238634 65241290 ~ 65242647 (+)
LOC118964311 LOC106586591 coding upstream 249936 65217057 ~ 65231345 (+)
LOC110520399 LOC106586589 coding upstream 268467 65192057 ~ 65212814 (+)
LOC110520411 NA coding downstream 6946 65489157 ~ 65491432 (+)
popdc2 popdc2 coding downstream 9699 65491959 ~ 65503791 (+)
wars2 wars2 coding downstream 100775 65583035 ~ 65599863 (+)
LOC110520416 tbx15 coding downstream 131925 65614185 ~ 65637086 (+)
LOC110520417 gdap2 coding downstream 294936 65777196 ~ 65813495 (+)
G286849 LOC106586596 non-coding upstream 26940 65453705 ~ 65454341 (+)
G286843 NA non-coding upstream 36727 65444312 ~ 65444554 (+)
G286824 xpo4 non-coding upstream 70364 65407736 ~ 65410917 (+)
G286726 LOC106582068 non-coding upstream 86496 65394376 ~ 65394785 (+)
G286791 NA non-coding upstream 179486 65300888 ~ 65301795 (+)
G286875 LOC106582073 non-coding downstream 25418 65507678 ~ 65508356 (+)
G286882 LOC106586600 non-coding downstream 28347 65510607 ~ 65512345 (+)
G286879 NA non-coding downstream 51342 65533602 ~ 65534662 (+)
G287085 NA non-coding downstream 75818 65558078 ~ 65558292 (+)
LOC110520396 LOC100136409 other upstream 314701 65161342 ~ 65166580 (+)
G286679 NA other upstream 371644 65109256 ~ 65109637 (+)
G285763 NA other upstream 1173921 64306512 ~ 64307360 (+)
G285203 NA other upstream 1397299 64071432 ~ 64083982 (+)
LOC118964312 LOC106586611 other downstream 552160 66027633 ~ 66036299 (+)
G288252 NA other downstream 1067562 66549822 ~ 66550487 (+)
G288430 NA other downstream 1249026 66731286 ~ 66733797 (+)
LOC110505407 LOC106586622 other downstream 1301113 66783373 ~ 66787442 (+)
G288674 NA other downstream 1510911 66993171 ~ 66994131 (+)

Expression


Co-expression Network