G286882 (LOC106586600)


Basic Information

Item Value
gene id G286882
gene name LOC106586600
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65510607 ~ 65512345 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU325249
ACACAACTTTAATATCAACTTTTACAGAGTGCAGTAATGAGGATTAGACACTTGGACTGGGGATGGTGAGCTATATGTTATGTGTTATTAGCAGATCGTGGGgcaattatttaacctttattctctctctctccttgggtAACTGGGAAGCCACCCAATCCATGGTCCGCTTGCGTGCCTCCTCCCAGCTGTACCGTGGAGCGTACCCCATGTCCCTCTGAGCCCTCCGATAGGAAAAGCTGAAGGGTGTGTTCAGCATGGTGAGGAGCTGCCGGTTTATGGGCGGTGTGAAGCGCTTGAAGGGGCAGAGCAGTATCTGCAGCATCTCCATGAGGAAACAGAGGAGGTAGAGGACTGGGATGGGCAGGATAGGCTTCTCCTGGATGCTGAAGCCCAGCggcgacaacacagcatggttgaAGTCAGAGTAGCTGACAGGCGGCGTGTCATCTGAGATGTAGTAGAAGTTCCCTCCGATGGCGGCTCTCCGCTGGGGGTCTCGCAGGGCACGGGCGGCCTGGAGGTGGGCCAGGGCCGCATTCCCCACGTATACAGGGTTCACCTGGGCCTCCGGGCGGGAGGTCCGGTACAACATATCCCCGTTCCGAATCCCGTCTCCCATATGGCCCAGCAGGAAACGGCAGCCCTCTCCATAGATGTACATGGGTCGGAGGGCGCAGGTGGCCAGCCGGCCCCCATTCTGGAGCACCTCACCCTGGGCTTGCAGGGTGACCTGCTCGGCCTCCTTCTTGGTCTTGCTGTAGGGGAACTTTAGGGAGCATGTGTAGGGTGTGTTCTCATCACCGTTGATGATGGGGTCTCCGTTGGCGTTGGGGCCGGCGACCTCGATGCTGCTGGTGTAGATGAAGGACACCACATTCTCCTGGACGCACGTCTCCAGAAGGAGCTGGGTTCCTTTGACGTTGACCCTGTGAAGCTCACTGTATAACACCTTCCCGGTGACGTCAATGAGGGACGCAGTGTGGAAGACCAGCGATGCTCCCTTGCACGCTCTCCTCAGCAGCTCACTATCACTAATGTCCCCCTCAAATACACTTACCAGCGTGTCCCCTCTGATCTCTTCCAGACACTGTATGAGTTGTGGTCGGACATTTATGTCCAGCATACGAATCTCTGTGAGCTTGTCTTCCTCCAGCAGCAGCCGTACCAGCCTCTCTCCCAGGAACCCACAGGCTCCTGTcaccacacacacatcacctTGCAGAGACATGGCCCAGTCCAAAATCTGAAACTACTACCACTTTCAGAAAACTCCCTTTCCTAAGCACTGGGAATGATCAATGCTCCGGACTTTGTCCCGTCCTAAAACTCCTCTGCTATCCCGAGGGCATGGCAGACACTAACTTaacacccctctcccctctctgaaaACTCCCTTTTTCTAGCCTGAGGGAATGTGCTAGAAGTGCCGGTAACTGCCACTCTGGGGTGAGAAGTGAGGCAAGGTCTACAGGC

Function

NR:

description
3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325249 True 1476 lncRNA 0.55 3 65510607 65512345

Neighbor

gene id symbol gene type direction distance location
popdc2 popdc2 coding upstream 6816 65491959 ~ 65503791 (+)
LOC110520411 NA coding upstream 19540 65489157 ~ 65491432 (+)
ift88 ift88 coding upstream 123901 65362736 ~ 65386706 (+)
zmym2 LOC106586592 coding upstream 199441 65260200 ~ 65311166 (+)
LOC110520400 NA coding upstream 267960 65241290 ~ 65242647 (+)
wars2 wars2 coding downstream 70690 65583035 ~ 65599863 (+)
LOC110520416 tbx15 coding downstream 101840 65614185 ~ 65637086 (+)
LOC110520417 gdap2 coding downstream 264851 65777196 ~ 65813495 (+)
LOC118964312 LOC106586611 coding downstream 515288 66027633 ~ 66036299 (+)
LOC110504495 LOC106586612 coding downstream 595522 66107867 ~ 66161419 (+)
G286875 LOC106582073 non-coding upstream 2251 65507678 ~ 65508356 (+)
G286869 LOC106586566 non-coding upstream 28347 65481281 ~ 65482260 (+)
G286849 LOC106586596 non-coding upstream 56266 65453705 ~ 65454341 (+)
G286843 NA non-coding upstream 66053 65444312 ~ 65444554 (+)
G286879 NA non-coding downstream 21257 65533602 ~ 65534662 (+)
G287085 NA non-coding downstream 45733 65558078 ~ 65558292 (+)
G287093 NA non-coding downstream 52324 65564669 ~ 65564900 (+)
G287095 NA non-coding downstream 55130 65567475 ~ 65567775 (+)
G287133 NA non-coding downstream 98673 65611018 ~ 65611305 (+)
LOC110520396 LOC100136409 other upstream 344027 65161342 ~ 65166580 (+)
G286679 NA other upstream 400970 65109256 ~ 65109637 (+)
G285763 NA other upstream 1203247 64306512 ~ 64307360 (+)
G285203 NA other upstream 1426625 64071432 ~ 64083982 (+)
G288252 NA other downstream 1037477 66549822 ~ 66550487 (+)
G288430 NA other downstream 1218941 66731286 ~ 66733797 (+)
LOC110505407 LOC106586622 other downstream 1271028 66783373 ~ 66787442 (+)
G288674 NA other downstream 1480826 66993171 ~ 66994131 (+)

Expression


Co-expression Network