G287067


Basic Information

Item Value
gene id G287067
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65526948 ~ 65532451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU325474
CTACCAAGCAAGTTTTCATAAATCATTGGGTACAGCGCAAGAAAAATGTCAGAGTAATCTGAAAGCAGCACAACAAGGCTCGACGAAGGAAAAGATGTAGGAGATGCAAGTGGTCAAAGAGGGGACCAGGAACACAGGCCGTGGACACGGAGCTACAGCAGGAATCAGTAATTAACCTCTCCAAAAAAGTCTGACGCGCAAATctcaagggccgcggcttttgtggcgcaaggggtaacgatgcttcgagggtggctgttgtcggtgtgtgcagagggtccctggtttgaaccCAGTCTTATCTAAGGGCCTCTCTTTTGTACCTGCATGTGCAGACAAACCATTTGATACGAAAGTAGATCTGTTTATGTTCTTTCGCAAGAAGTCAACTTAAGCACGTGTTTTCTCAAAACACTGTTTCGTGCCTAGAAACTCAACAAAGAACTGGTACCCATTTTAAGCCCAAAAGCAAATTATGGTCCTATGGTTAACAACTCCTCAATTAATACCTCCTCAATTATAGTCGAACAAGATGCCATGTCagtgtaacagtttagcttccgtccctctcctcgccccatacctgggctcgaaccagggaccctctgcacacaccgacaacagccaccctcgaagcatcgttacccattgcaCCACAAAAGcctcggcccttgcagagcaaggggaacaactatttcaaggtctcagagcgagtgacgtcaccgattgaaacgctattagtgtgcatcctgctaacaagctagccatttcacatcggttacactcaccccccttttgacctccctcttttccgcagcaaccagtgatccgggtcacggcaccaatgtaacagtttagcttccgtccctctcctcaccccgaACCAGTTACCCTCTGCACACaccgacaacagccacccttgaagtatcattacccatcgcgccacaaaagccaaggcccttgcagagcaaggggaacaactacttcaaggtctcagagcgagtgacatcaccgattgaaacgctattagcgagcaccccactaactagctagccatttcacatcggttacatcagTACATACGAGAAAAACAAACTACATTCAGAAGAACCTCACTAGAACAGAAGAACAGGCACTTAATGAACTAATGAAAGATTCATCTTTGGTTATTAAACCTGCAGACAAGGGGGGGTGCTGTTGTCGTTTTAGACTATGAAAAATACAAAGAAGAGATTCAGAGACAAATCAGCAATGAACGTTTCTATAGAAAACGGAGTGTTGATCCCACACAGGTGTTCCAAAGGGATATATGCTCTAATCTGGAGCCCTATTAAATAACCTTATCTCAAAACCTGAATATGAATATCCTTGCTGCAAATGTGCCATACGTCCATGCCTGTACATTTTGTCGAAATTACACAACCCTAAAACACAACAAGGCAATAATCCAGGCAAACCAGTGGTTGCAGGAATAGGCTCAATGCTAGAGCCATTGTCGAACTTCATAGACTCTTTTATTAAAATGAATGTGCAAGCATTGCCATCATATGTGAAAGACTGTAGACTTCATAAACAAGATTTCACTAATAACGGGTTTAACAGAAGACTGTATTTTGGTCACATTAGATGTCGAGAGTCTTACTATTTCAGGTCTGATGATGAACACTATCTCCAAACAAATGGAACATAGATGGACTCCACATTCGCTCCGAGCTATGCTAACCTTTATGTacccaggtaaagacagtttcaggttggatattcAACGGATATACGCGCTTTCAATCCTGAAtagctttcaaaccacttgagccacagactccaaatagtgtcatgatgttggaaaaattgcGCAGGTCTTATTTTCACTATTTGACCCTTAATTAGCTTTGAAAAGCTAATAAACGTGTGGAAATGTGAGCAGCATTTTGTATTCCTAGTTGAATTAGAGAATGTAAACAAAGTACAAACTTTTTTATatttgaatttcaatagctccttggtcatgtgacctactgacttcaaacaaggttcagaatgtccactgaccacccttctatattgcacacccttgagtttgtccattttcatctcacaagtTTTTACATTAATGTTTTTAATTttctaatttcaatagctccttggtcatgtgacctactgacttcaaacaagaTTCAGAATGTACCCCCCTTGGGCCTACACATTGCATACCCTTTtgttgtcaattttcatctcaCGCGATTTTACATTAATTTGCCTGCTCTGCCCCCATGAAGGACAGTGTCACTCACACACCTATTCACTTGGGACTTCTCCCTGGGGCCTTCCTGACCTCCAGCAGGCCCCCATTGACCTGGTGACCTCTGACTCCAGGCCTCTAGGCCCACACGCCTGCCTGCCCTCTCCTTGGGCCTGAGAGTGTATAGCTTTCTCCCAGGAACTACAGCCCTTCAGGCCTCCACACCTACTCTCCCTACCCGGTCAACACCCCTCTCCCTTAGCATATAGCTTACTCCCTGGAATTACTAAAACATCTATAGTCCTGCTGTCAGGAACCACGTGCACCTGGTAACCCGTAAGTCCCCACTCCAACATCCATGGCCATGGCCTGAGTGCAATCCTTATCCCGGAGTTACAGATCTTTTTTGCCAACTTCCCTTACCTACATTGTTGTAATATGCCAGAGGCTGTTccccttggagacctgctgcggatatgggtactgCCCTGCGTGAGATTTGCACCTTCTCCCTCAGATTTTCAAGGGCCAGGGAGAGCTGACCGGACGCCGCAGAAACCGCAaagctttccagggcttgggcccctctctcggggcgaacccattccagggcgccctgcccttcacaaagaaaagaaaactctccccggggctcccgccagcttctccgggatcggtcatGTTACCATACTGGATGCCTCGTGGCCCCCATCTCAACCAGTCCTTGGACATTCTGAAAGTAATTtgagATTACGCTGACGTTTTTCTTGCGCTGTACCCAATGATTTATGAAAACTTGCTTGGTAGGTCGATatcctcattgtggttttacagacgtgttttATGTTCACACTTTATTagaatatttatgaaatgc

Function

NR:

description
serine/arginine repetitive matrix protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325474 True 3116 lncRNA 0.46 2 65526948 65532451

Neighbor

gene id symbol gene type direction distance location
hsd3b1 LOC106586600 coding downstream 14603 65510598 ~ 65512345 (-)
pla1a pla1a coding downstream 18564 65503985 ~ 65508384 (-)
LOC118944602 NA coding downstream 40147 65485884 ~ 65486801 (-)
hcn5 LOC106586566 coding downstream 42163 65480140 ~ 65484785 (-)
ska3 ska3 coding downstream 50438 65472285 ~ 65476510 (-)
LOC110520413 LOC106586602 coding upstream 3363 65535814 ~ 65549415 (-)
trnaa-ugc-4 NA coding upstream 10583 65543034 ~ 65543108 (-)
LOC110504464 NA coding upstream 164127 65696578 ~ 65697411 (-)
LOC110505400 NA coding upstream 177153 65709604 ~ 65710566 (-)
LOC110504474 wdr3 coding upstream 236863 65769314 ~ 65777312 (-)
G287043 NA non-coding downstream 78531 65448068 ~ 65448417 (-)
G287041 NA non-coding downstream 80646 65446079 ~ 65446302 (-)
G287005 NA non-coding downstream 187053 65338173 ~ 65339895 (-)
G286979 NA non-coding downstream 222450 65290732 ~ 65304498 (-)
G286986 NA non-coding downstream 226024 65300694 ~ 65300924 (-)
G287081 NA non-coding upstream 22079 65554530 ~ 65554731 (-)
G287083 NA non-coding upstream 23976 65556427 ~ 65556658 (-)
G287097 NA non-coding upstream 35569 65568020 ~ 65568248 (-)
G287110 NA non-coding upstream 46821 65579272 ~ 65579563 (-)
G287206 NA non-coding upstream 126202 65658653 ~ 65658911 (-)
G287042 NA other downstream 79665 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 226531 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 291040 65235180 ~ 65235908 (-)
G286638 NA other downstream 450963 65054700 ~ 65075985 (-)
G286580 marco other downstream 497212 65014259 ~ 65029736 (-)
G287112 NA other upstream 47340 65579791 ~ 65580495 (-)
G288578 NA other upstream 1310220 66842671 ~ 66842881 (-)
G289678 NA other upstream 2094381 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 2351301 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2674139 68206330 ~ 68208674 (-)

Expression


Co-expression Network