XLOC_022221


Basic Information

Item Value
gene id XLOC_022221
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 15696527 ~ 15764318 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044976
aaACGAAGCAAATACGGCCACTGTGGACAGCACTGTGTGTAAAGGGAAAGTTACTTATCTTTAACAGTGTTTATTCACCTTTTTCATAGTTTGTCTTCATTGGGAGAAGGATCACAGGGTCATTTGAGCCGAACACTCTTGGCTTAGAATAATAAACTGGAGGAAGAGGGCCCTCGGGGTAGCCAGAGAAAACAACTCTCTGTTATGGATGAGTCGTGGATGCATGAAGAAGTGTGCATGACGGATGTTACACGCAAAAGTAAAAGGGCGAGCAAAGTTCAACGAGGAAATGCTGGAGGTCTGCTGTCAAATCATACTCGACTAATGCAAACATTCCCAAGACACAGAAGAGAAAGTAAATTGAAAGTTTTCAGTATACAGATGGGGAACCaggagcagaaaaaaaaacagacaatggCAGATTAAATGGAGGTCATGGAACAGTTCGCGAATGGAATATCCAAGGATTTCACCTGAATCTTGGAATGCTCTGGGATGCAGACGGGTAACCAGGAATAGAGAGAATTCAGACACGGAGAACAGACAGGGAACCAGAAGAGACCAGCACTAGGACAGAGACATAGTCACTAGAGAAAACAAGAGaCCCCGTCTCATTTCAGCCTGACCTCCAAAGGTTTGGATATCAGGTGCCATATTCTCAGTGTTGTTGGCCTGATGAGAAGGTCCAGGCTGTTCATCATCTCTGGATGTTTCTTGAAAGGATGCTTGAGACCCTGTCTCAAGCCCAAGCTTTGGTCAGGTGATTCATAATCAAAAGTTGACCCCGAATCTGAATTAGAAGTTGACCCAGAATCGGAGGTGGACCCAGAATCTGACTCAGAAGTTGACCCAGAATCTGAAGTGGACCCAGAATCTGAATCTGAGGTGGTCCCAGAATCTGAATCAGAAGTTGACCCAGAATCTGCAGATCCAGAATCGTCAGTGCTGG
>TCONS_00044720
CAAagattcatatttttgttttgttttagcaaaACGAAGCAAATACGGCCACTGTGGACAGCACTGTGTGTAAAGGGAAAGTTACTTATCTTTAACAGTGTTTATTCACCTTTTTCATAGTTTGTCTTCATTGGGAGAAGGATCACAGGGTCATTTGAGCCGAACACTCTTGGCTTAGAATAATAAACTGGAGGAAGAGGGCCCTCGGGGTAGCCAGAGAAAACAACTCTCTGTTATGGATGAGTCGTGGATGCATGAAGAAGTGTGCATGACGGATGTTACACGCAAAAGTAAAAGGGCGAGCAAAGTTCAACGAGGAAATGCTGGAGGTCTGCTGTCAAATCATACTCGACTAATGCAAACATTCCCAAGACACAGAAGAGAAAGTAAATTGAAAGTTTTCAGTATACAGATGGGGAACCaggagcagaaaaaaaaacagacaatggCAGATTAAATGGAGGTCATGGAACAGTTCGCGAATGGAATATCCAAGGATTTCACCTGAATCTTGGAATGCTCTGGGATGCAGACGGGTAACCAGGAATAGAGAGAATTCAGACACGGAGAACAGACAGGGAACCAGAAGAGACCAGCACTAGGACAGAGACATAGTCACTAGAGAAAACAAGAGGTAAGTAACATAATTAAATGTAACGACACTGACTGTTAGGATAGTCCAGTACCTTATTCAAGATCGAGATATACTAGTTGATTTGATTTGTTCACAAAGGCTATTTAGACTCAACAGCAAAGCAGCAACAGTGACAGGTGTATACAGTACGGTTAAAACTTTTGACAAATCGAATTCGAAGGCTTTTAGATCAAGGTTTAATCATTCTATGAAAGGATTAAATGGACATCAGAGGTGAGCTACCCGGTTTACTGAGCTGCCCATGCACTGCTCTGGAGGGATGCTTTGTTAACCCAAAGGCTTTCTTTATAAAGAATTAATAATTCATGAATGTAACATCACTATTTTAAAGTTAGTTTGTTTGATTGGGTGAGAACTTTTTTTCATACAAAACATTTGACTTTCTGGAAAAGCAGACAAGCTGTAACGTTGTGCTCTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044976 False 949 lncRNA 0.45 6 15696527 15764287
TCONS_00044720 True 1073 lncRNA 0.40 4 15747365 15764318

Neighbor

gene id symbol gene type direction distance location
XLOC_022219 NA coding downstream 132930 15432413 ~ 15563597 (-)
XLOC_022218 sulf2b coding downstream 366297 15203822 ~ 15330230 (-)
XLOC_022217 BX537335.1 coding downstream 588565 15107848 ~ 15107962 (-)
XLOC_022216 si:ch211-218g4.2 coding downstream 605745 15046544 ~ 15090782 (-)
XLOC_022215 phf20b coding downstream 659738 14992800 ~ 15036789 (-)
XLOC_022222 eef1a2 coding upstream 86620 15850938 ~ 15878879 (-)
XLOC_022223 mrgbp coding upstream 135375 15899693 ~ 15916391 (-)
XLOC_022224 BX511184.1 coding upstream 181836 15946154 ~ 15951976 (-)
XLOC_022225 si:dkeyp-100a5.4 coding upstream 715171 16479489 ~ 16485848 (-)
XLOC_022226 NA coding upstream 752664 16516982 ~ 16518846 (-)
XLOC_022212 NA non-coding downstream 958141 14735335 ~ 14738386 (-)
XLOC_022211 NA non-coding downstream 1112988 14574498 ~ 14583539 (-)
XLOC_022210 CR388373.2 non-coding downstream 1281314 14407888 ~ 14415213 (-)
XLOC_022227 CR318668.1 non-coding upstream 796915 16561233 ~ 16562161 (-)
XLOC_022228 NA non-coding upstream 879806 16644124 ~ 16648039 (-)
XLOC_022231 NA non-coding upstream 929260 16693578 ~ 16709238 (-)

Expression


Co-expression Network