XLOC_022223 (mrgbp)


Basic Information

Item Value
gene id XLOC_022223
gene name mrgbp
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 15899693 ~ 15916391 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043869
gtgtgtgtgtgcgcgtgcgtgtgtttgtgtgttcgttCTCGTTTGGTGATGCTGGTTCCTGTGATGAACTGGGTTAACGTTAGCACCAGTGTGTGTGCGAGACTGCAGAAACATGGGGGAAGCGGAGACTGTGCCATCAGACGAAAAACCCGCAGAAACTGGCGTCTGTACAGCCGAAGAATCGATTGTATGGAGTCAGGAAGTCGAAGTGTGTCTTTTTCACGCCATGCTCGGTCACAAACCCGTAGGGGTGAATCGTCATTTCCACATGATCTGTATTCGTGATAAGTTCAGTCAAAATATCGGCAGACAGGTGTCATCTAAAGTCATCTGGGATCACCTGAGTACTATGTATGACATGCAGGCTCTGCATGAATCAGAAATACTTCCATTTCCAAACTCTGAAAAGAGCTTTGTGCTTCCAGAAGAGATCATACAGGACGTCAAGGAAGGTAAAGTGGGATCTGAAGATGACGTGAAAGAGGAGTTCAAAGAAGAGAGCGACCCTCCTGCAACCCATGAAGAAGGTCTGGGTCCCAGTATGGCTGGCCAGGATTTTGCGAGGCAGCAATTCCTCCGTGAAGACGTCGGAGAGATCGAGCAGCGGCCGAGAGAAAGAGCGGGCCGAGAAGGGGGCCTCAGGTGAGTCGGGCAGCGGGATGAAGGAATCGACTGGGGAAAAAAGGAAGAGGAGCCGAGCCGTGGAGAAGGTGATGAACTCCAGCAACCCCTCCAGTCCCGGAGGAGCCAAACGCCGCAGGACGTAACCTTAGCCGGCTGCACAAGGACACAGGACATCAGAcagggaagaaaaaaaagactgacAGAGAAAGGTGTAGCTGATATTGGGCACACTAGAGCCGGCACGAAggtgaaatgtgtgtgtgcgcgtgttttcTGCAGTCTGAGGTTCACAAAGAGACGGTCTTGTGCTTGGAGCATTCTGAGCTGTTCACAGACAGAGACTGCAGAAATATAGTGGAAGGAAAGTCTTTGCTGGTTGTGTAGGATCAGACTACACTTCTGGGAAAAGTAAGTAATATGCTTTCCTACACTGAGTTTGAGACAACACTgcaacctttttttgtttttaagtgaaAACTGGGGATTTTAAGTGGTAGCTCGATTTTATTTGTATCCGAGCCAGCATTCTTGAAAAGGACCAGAAGATCAACTAGTTTGTTGTGTGATTTTATTAGGACTTACACTGCAAATAAGCTGAGCTTGTTGTTTGTTATTAACTGTAACTATTAGACGGTCATTAAGCAAACGTTTAGGAAAcgatgaagatttttttttcactgtttcTGGGTTAATGATTGTTTGAATGATTGGACCAGTTGTGTACTGAATACATCAGGAGTTAAACCCTGATTAAACAATCTTTGAGAACAA
>TCONS_00043870
gtgtgtgtgtgcgcgtgcgtgtgtttgtgtgttcgttCTCGTTTGGTGATGCTGGTTCCTGTGATGAACTGGGTTAACGTTAGCACCAGTGTGTGTGCGAGACTGCAGAAACATGGGGGAAGCGGAGACTGTGCCATCAGACGAAAAACCCGCAGAAACTGGCGTCTGTACAGCCGAAGAATCGATTGTATGGAGTCAGGAAGTCGAAGTGTGTCTTTTTCACGCCATGCTCGGTCACAAACCCGTAGGGGTGAATCGTCATTTCCACATGATCTGTATTCGTGATAAGTTCAGTCAAAATATCGGCAGACAGGTGTCATCTAAAGTCATCTGGGATCACCTGAGTACTATGTATGACATGCAGGCTCTGCATGAATCAGAAATACTTCCATTTCCAAACTCTGAAAAGAGCTTTGTGCTTCCAGAAGAGATCATACAGGACGTCAAGGAAGGTAAAGTGGGATCTGAAGATGACGTGAAAGAGGAGTTCAAAGAAGAGAGCGACCCTCCTGCAACCCATGAAGAAGGCAGCAATTCCTCCGTGAAGACGTCGGAGAGATCGAGCAGCGGCCGAGAGAAAGAGCGGGCCGAGAAGGGGGCCTCAGGTGAGTCGGGCAGCGGGATGAAGGAATCGACTGGGGAAAAAAGGAAGAGGAGCCGAGCCGTGGAGAAGGTGATGAACTCCAGCAACCCCTCCAGTCCCGGAGGAGCCAAACGCCGCAGGACGTAACCTTAGCCGGCTGCACAAGGACACAGGACATCAGAcagggaagaaaaaaaagactgacAGAGAAAGGTGTAGCTGATATTGGGCACACTAGAGCCGGCACGAAggtgaaatgtgtgtgtgcgcgtgttttcTGCAGTCTGAGGTTCACAAAGAGACGGTCTTGTGCTTGGAGCATTCTGAGCTGTTCACAGACAGAGACTGCAGAAATATAGTGGAAGGAAAGTCTTTGCTGGTTGTGTAGGATCAGACTACACTTCTGGGAAAAGTAAGTAATATGCTTTCCTACACTGAGTTTGAGACAACACTgcaacctttttttgtttttaagtgaaAACTGGGGATTTTAAG
>TCONS_00043871
AACGTTAGCACCAGTGTGTGTGCGAGACTGCAGAAACATGGGGGAAGCGGAGACTGTGCCATCAGACGAAAAACCCGCAGAAACTGGCGTCTGTACAGCCGAAGAATCGATTGTATGGAGTCAGGAAGTCGAAGTGTGTCTTTTTCACGCCATGCTCGGTCACAAACCCGTAGGGGTGAATCGTCATTTCCACATGATCTGTATTCGTGATAAGTTCAGTCAAAATATCGGCAGACAGGTGTCATCTAAAGTCATCTGGGATCACCTGAGTACTATGTATGACATGCAGGCTCTGCATGAATCAGAAATACTTCCATTTCCAAACTCTGAAAAGAGCTTTGTGCTTCCAGAAGAGATCATACAGGACGTCAAGGAAGGTAAAGTGGGATCTGAAGATGACGTGAAAGAGGAGTTCAAAGAAGAGAGCGACCCTCCTGCAACCCATGAAGAAGGTCTGGGTCCCAGTATGGCTGGCCAGGATTTTGCGAGGTATGGACAGAAGAAAACGTTTTGCTCTGTTCCAAAACTCCAGCTTGAGCTCAGTACAGGCCAGCTCATTACCAGAGGCCTCTGTAGACAGCCTTCAGAGACCTCTGACCATGCAGCAATTCCTCCGTGAAGACGTCGGAGAGATCGAGCAGCGGCCGAGAGAAAGAGCGGGCCGAGAAGGGGGCCTCAGGTGAGTCGGGCAGCGGGATGAAGGAATCGACTGGGGAAAAAAGGAAGAGGAGCCGAGCCGTGGAGAAGGTGATGAACTCCAGCAACCCCTCCAGTCCCGGAGGAGCCAAACGCCGCAGGACGTAACCTTAGCCGGCTG

Function

symbol description
mrgbp Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex. Orthologous to human MRGBP (MRG domain binding protein).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0016573 histone acetylation biological_process
GO:0035267 NuA4 histone acetyltransferase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0043189 H4/H2A histone acetyltransferase complex cellular_component

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040426-1698 Predicted to be involved in histone acetylation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of NuA4 histone acetyltransferase complex. Orthologous to human MRGBP (MRG domain binding protein).

Ensembl:

ensembl_id ENSDARG00000028894

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043869 False 1395 mRNA 0.47 6 15899693 15916391
TCONS_00043870 False 1078 mRNA 0.49 5 15899973 15916391
TCONS_00043871 True 817 mRNA 0.52 6 15900308 15916316

Neighbor

gene id symbol gene type direction distance location
XLOC_022222 eef1a2 coding downstream 20814 15850938 ~ 15878879 (-)
XLOC_022221 NA coding downstream 135375 15696527 ~ 15764318 (-)
XLOC_022220 NA coding downstream 202644 15690531 ~ 15697049 (-)
XLOC_022219 NA coding downstream 336096 15432413 ~ 15563597 (-)
XLOC_022218 sulf2b coding downstream 569463 15203822 ~ 15330230 (-)
XLOC_022224 BX511184.1 coding upstream 29763 15946154 ~ 15951976 (-)
XLOC_022225 si:dkeyp-100a5.4 coding upstream 563098 16479489 ~ 16485848 (-)
XLOC_022226 NA coding upstream 600591 16516982 ~ 16518846 (-)
XLOC_022227 CR318668.1 coding upstream 644842 16561233 ~ 16562161 (-)
XLOC_022228 NA coding upstream 727733 16644124 ~ 16648039 (-)
XLOC_022217 BX537335.1 non-coding downstream 791731 15107848 ~ 15107962 (-)
XLOC_022212 NA non-coding downstream 1161307 14735335 ~ 14738386 (-)
XLOC_022231 NA non-coding upstream 777187 16693578 ~ 16709238 (-)

Expression


Co-expression Network