G287666


Basic Information

Item Value
gene id G287666
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65997968 ~ 66000189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU326147
ggtaactagtaacagaatacatttagaaagtaacctaccctgcCCTGTCCCTTTGTCTCAGTGATATAATGAAAAACTTCACAAAAACTTGGTAATAAAATGGTAGGATTATGACGATACAAAGTAATTTCCAAagtacatacagtggcaagaagaagtatgtgaaccctttggaattacctggatttctgcataaattggtcatcaaatttctGATCTTCATCGaaatcacaacaatagacaaacacagttcttaattaactgataacacacaaacaatgataCGTTTTCATGTGTTTAATAAAGACGCCATGTAAACATTCATAGTGCAGGGTAGGAAAagcatgtgaacccttggatttaataactggttgaccctcctttgacaGCAATAACTTCAACCAAATAGAATacggtttcagttcagcaatattcttgggatgtctgtgAACCACTCGAGGTCataccacagcatctcaatcggtttgaggtcaggactgactgggccactccaggaggcgtattttcttctgttgaagccattctgttgttgatttacttctgtgttttgggttgttgtcctgttgcatcacccaacttctgttgagtttcaattggcagacagaccACCTTACATTCTCctacaaaatgtcttgataaaaatgtattcccaagtttccgttgatgatagcaagctgtgcaggccctgaggcagcaaagcagccccagaccatgatgctccctccaccatactttacatagtgttgtgtgttccttaaAAACAACTCAAATTAAGTTTCATCTgcccacagaatattttgccagttgcactatggaacatccaggtgctcttttgtgaacttcagatgtgcagcaacgtttttttttggacagcagtggcttatTAGTTCAAGCACACTgtttttctattgttgtgacttagaaaaagatcagatcaaattttaggACCAagttatgcagaaatccaggtaattccaacgGGTTCACATATTTTTTCTAGCCAGTAGGTTTTACATCAGTGACAGTGTTGtctaaatgtaatgtcattgagATCTTTGAAATAATCACCAGTGGTGAATAAGCAGAGTAGCATGCTACAGTATTGGTCATATAACAATTTCCCCAAACACCTTGAGAGCCTTTCTAATAATATATAACACTGTTAGTGTGTCACATGAATAAAGACGGACAGCAACACTTGAACTTGGCACTTCTGTTCCTACATGACCTGTTTTAACACATTAGCTATTTATCTCCTCCAAGTGGCAGTATTTACTCTACAATTATGTATTGATTAAAGTTTCTCTTTAATGCTGTATAAACATAGTTTATTAAGCTTGAATCAGAATGGTTATTGCAGCACAAGAAATGCTAATCAAGAAGAACCTGACTAAGTATCTTTTTGAATAAAACCCTTACACTCTTCTCCCACTGAGCACCAACCGATGCCATGGACGTTGAAAAGTAGTTGGAATTTGGTCGTTCCACCCTGGCCTTGATTTGACCAACGTTCACAGACGTCATATTTTTGGTCCGGTCAGGACCGGCCTTAATTTGGCCCCTTTtcggttcagatttggtctggtccaGACTGGCTTTTATTTAGCCAAAACAGAGGTCTATGATTGGTTCATATTTGGTCCAGTGACTGGCcttgatttgtcccaaacatagatgtctatgattggttctGATTTGCACCAGATCTGAAGCATTCATAGACCTCCATTTCACaggtttggacagcacagtacagcagagcagagcacagtACATAACATTATCATAGAcatatgtttcacaagtttggacagtgcAGTACATTAaagtaaagtagagtatagttgagtagagtacagctcagtacactacagtatggtAAAGTAGAGCACAGTATAATGTACTATATTGTGCTATACTGGTCTGTGCTGTCCAAACCTGTGAAACAGATGTCTATAACCCTTTTCCCATAACGTTACTGAGTGAATTAAGAAGGAAAGTTTATGTAACTTGTAACAACGTAAGAAGTAAACACTGGAAAAGGCTACTGAGGATGGGGTCGCAATCCCAAGTGTTCATTTCTACTTTTACGTAATTCagcagacattcttatccagagtcagtgcat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU326147 True 2149 lncRNA 0.39 2 65997968 66000189

Neighbor

gene id symbol gene type direction distance location
LOC110520422 vtcn1 coding downstream 13843 65978825 ~ 65984444 (-)
LOC110520420 trim45 coding downstream 19259 65973480 ~ 65978709 (-)
LOC110520419 man1a2 coding downstream 34255 65853721 ~ 65963713 (-)
LOC110520418 fam46c coding downstream 157490 65821455 ~ 65840478 (-)
LOC110504474 wdr3 coding downstream 220656 65769314 ~ 65777312 (-)
ttf2 ttf2 coding upstream 19844 66020033 ~ 66027601 (-)
rnf17 rnf17 coding upstream 36153 66036342 ~ 66070134 (-)
LOC110520425 LOC106582038 coding upstream 182927 66183116 ~ 66193487 (-)
LOC110520429 LOC106586615 coding upstream 267996 66268185 ~ 66295887 (-)
LOC118964314 NA coding upstream 399878 66400067 ~ 66412373 (-)
G287664 NA non-coding downstream 378 65993773 ~ 65997590 (-)
G287556 gdap2 non-coding downstream 214307 65782911 ~ 65783661 (-)
G287552 NA non-coding downstream 221176 65776565 ~ 65776792 (-)
G287693 NA non-coding upstream 68948 66069137 ~ 66069360 (-)
G287697 NA non-coding upstream 74994 66075183 ~ 66075418 (-)
G287706 NA non-coding upstream 88116 66088305 ~ 66088557 (-)
G287853 NA non-coding upstream 107683 66107872 ~ 66108434 (-)
G287919 NA non-coding upstream 208972 66209161 ~ 66246589 (-)
G287112 NA other downstream 417473 65579791 ~ 65580495 (-)
G287042 NA other downstream 550685 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 697551 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 762060 65235180 ~ 65235908 (-)
G286638 NA other downstream 921983 65054700 ~ 65075985 (-)
G288578 NA other upstream 842482 66842671 ~ 66842881 (-)
G289678 NA other upstream 1626643 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 1883563 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 2206401 68206330 ~ 68208674 (-)
G290542 NA other upstream 2578914 68579103 ~ 68580707 (-)

Expression


Co-expression Network