G287513 (ttf2)


Basic Information

Item Value
gene id G287513
gene name ttf2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66024443 ~ 66024967 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU325956
CCAGGATCCCTCCACAGGGTTTCTGGGTCTCTCTCCACAGCAGCCAGGCCAGAGCTCGTCTCTGATGGGCCAGTAGAGGCACCTTGATGCCTTTTGGGTCCGTAACCTCAGCATCGGGGTCGGGGCAGGACTCCAGGGAGCTGTGGAGGTGGTCAATGGCCTCAGAGGTGGCGTTCTTCACCGCTAGCAGACGGTTGTCTGTCATCCTGCCTCCATAGAACGCTTGGCTCTGGGGGTTCACTCCATACATCTGAGTGTATCCCTGGCTGAGCTGCAGCCCCATTGAGCTGGTGGAGGCCTG

Function

symbol description
ttf2 Predicted to enable ATP binding activity; hydrolase activity; and zinc ion binding activity. Orthologous to human TTF2 (transcription termination factor 2).

NR:

description
PREDICTED: transcription termination factor 2 isoform X5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU325956 True 301 lncRNA 0.60 3 66024443 66024967

Neighbor

gene id symbol gene type direction distance location
LOC110520417 gdap2 coding upstream 210948 65777196 ~ 65813495 (+)
LOC110520416 tbx15 coding upstream 387357 65614185 ~ 65637086 (+)
wars2 wars2 coding upstream 424580 65583035 ~ 65599863 (+)
popdc2 popdc2 coding upstream 520652 65491959 ~ 65503791 (+)
LOC110520411 NA coding upstream 533376 65489157 ~ 65491432 (+)
LOC118964312 LOC106586611 coding downstream 2666 66027633 ~ 66036299 (+)
LOC110504495 LOC106586612 coding downstream 82900 66107867 ~ 66161419 (+)
LOC110520426 LOC106582091 coding downstream 184146 66209113 ~ 66268815 (+)
LOC110520428 NA coding downstream 203432 66228399 ~ 66232190 (+)
LOC110504505 LOC106586617 coding downstream 345090 66370057 ~ 66387340 (+)
G287470 NA non-coding upstream 1787 65959186 ~ 66022656 (+)
G287383 NA non-coding upstream 162907 65860525 ~ 65861536 (+)
G287342 NA non-coding upstream 212427 65810570 ~ 65812016 (+)
G287334 NA non-coding upstream 254882 65769192 ~ 65769561 (+)
G287309 NA non-coding upstream 267906 65756337 ~ 65756537 (+)
G287530 rnf17 non-coding downstream 38166 66063133 ~ 66063367 (+)
G287531 NA non-coding downstream 38857 66063824 ~ 66064131 (+)
G287534 NA non-coding downstream 44361 66069328 ~ 66069643 (+)
G287543 NA non-coding downstream 61390 66086357 ~ 66086583 (+)
zmym2 LOC106586592 other upstream 738887 65260200 ~ 65311166 (+)
LOC110520396 LOC100136409 other upstream 857863 65161342 ~ 65166580 (+)
G286679 NA other upstream 914806 65109256 ~ 65109637 (+)
G285763 NA other upstream 1717083 64306512 ~ 64307360 (+)
G285203 NA other upstream 1940461 64071432 ~ 64083982 (+)
G288252 NA other downstream 524855 66549822 ~ 66550487 (+)
G288430 NA other downstream 706319 66731286 ~ 66733797 (+)
LOC110505407 LOC106586622 other downstream 758406 66783373 ~ 66787442 (+)
G288674 NA other downstream 968204 66993171 ~ 66994131 (+)

Expression


Co-expression Network