XLOC_022228


Basic Information

Item Value
gene id XLOC_022228
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16644124 ~ 16648039 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044978
gaaacaacattgcctttgatgcattgtttttgaatagttttcttttttttctccctaatttactgttggtggctgtttttgctccattcACTTCCAATATaaccacattgttttttttatttttttattgcaagccatgacaccatataatcaggCATTTTTGATTGtaggtggttttccctgttgggaagatgTAAAATTGGTCATTTttgctgttgatcatcagttggcaccattaaccctttagatagaccTGTGcgaaaaagcttagtttctggattttatatggaataacagcaaattaaatgtgtgtatgtaAGACTGACCATTACACACTTACCTTGaagtgtctgagaaaatctaaatatgcatctcagctcttaGAACTACATGGTGCCTaaatacagtctttgtttttatttactccattaaatgtggttataatggaagtcaatggggcaataACAGTCACGaccaaaaaacagcaacaaccaacagtaaattagagagaaaaaatgaaaatctaacaatgcatcaaagccaatgttgttactgtaatgaaaaggtttaaaaaacccaacccacaattactttttatattgaaaatgtgtcattttgtgtgttttttcaccaaataagtgacatcatttatgaatttagtAATCAAGGGGTTAAAATCCAGtaattttcaaaacaatttagtatttttgatcagaactgaggttaattaacagatttatgcaaaaataacataacaaaagggtagtaaatttgaacattaCACAAGGGTTATATGGCCTTAACTAATGTGTACttgcatgaaaattaataatttgttacaatttgttattttgtaaaacatattCGTTCTTTTGATTAATTAAACACCTGgatgtaattacattttaaattacacTGTTAACCATCTCTCTTACACCTTAACTCACTCTTAAACCTAcctataccaccaaacctgtccctatcTCGACCCATATCCCACATCAACTAATACATAATGAAGACaaaaaaaagtctCCAAATGGTTTagaaccacatgagggagagtaaacaaCAAGTCAATATGGATTTTGAGGTAAACGTTCCCTATAATGGAGTATCTCAAACTTAAAAACAAACTATATTTCATTCTTATTAGTTACCACCAAAATGCAGACAGACAATTCATTTATAGAGTCATGGATTTTCACATTAAATCACACAcagctcctctctctctctcctaagAGTGCTGAACGCTGTTTACATTTCCATAAAACAAACATGTAACATAACAGAAATATTATTACTCAAATTTACCAGCATATAGGGCCAACATACACATCTCTGCTCGTAATATGGCTTCAAAAATTCCAGAAAACCTTATCAAGGCCTTACAGGTCAGTTATACAAAGCTTTATATCAACGTAAAACATTTACCTGGCCGAATAACTAATGTAATAGTTATTCTGTACATATCTTTGACAAAACAGACGATAGCAGTTTGGGGGGAGCCTACTATACCTGGAGAAACAATCTCATTTAACCTCTCATAATCACATTCATAGTTCAACAAACACAAGtcgatattaaaaaaacaaaacaaatacatacagtcTTATTAACAACTGTGAGGTTCTTTTATAAGTGCTAAGTTGGAATGGAGGTGAAAGGTGCAGGGActaaactacaaaacaaacacatCTGTGCACGCTTGCCACCACATGAAGCACAACTTAAGATTGTCAGCAGTTCAAAGAATAAATATCAAACACCCTGCAGACGCCACAAAATCGGCACTACAGAAAGCAGCAAATTATTTCAAAGAGAACTTTACAACGAATATTGCActacatgtactgtacacaacatcaGAGGGAGGAGGTAGACTGAAAGGCAGCGGCTATTCATGGTTTTGGAGGAACAGAAGATAAGACAATATGTGAGACACAAATAACGACAGTTGGTGTTCGCCTGGCTGATTATCTGGTACATTGTTTTCAACAATTGAATGCAAACTTTGATTAATGGTTCTTTGAAATAACCCTGAACCACAAATGCACATGTATGCACTGGCCTTTGGACAGACAGAATCACACAATCAAATATACTTCAAGTAATTGCTTATAAAGTGAATTATAGTGCAATTGACAGTAAATGTCATCCATTACCAAGTGTCAGTCAAATAAAAGGTCAACATGAACATCTCGGGGGACATACAGTCTTGGCCAAATGATTGGAAAAAGCTGGAAACTAAAATTGTTAAACTTCAAATATTTGGGCTAAGCCAGATGTAGAGGATTTTTAAATGGTAATAAAAGTGGGTAATCACAGACAGACAGTTTCAAAAGATCtttgaattaataatatttaaacgtACATGCTCAGTAATTATGTGTATGAAACTTCACTTTCAAAGAAAAACTAATATGGAGCAGgttgaaagctggttcttctattttttttttttagcaaagggGAAATGAGAAAATTACTGGCAGAGATGTCTTCATAGATGTCGATACTCTTTTGTGACATGGTCATGGCTGCCATGTTATCATTATAAAAGAACACATCCACCAATTTGTGAAAATTCACCATGGCCATTGACTATTGCAAAAATCCCAATAGCAAACTAATCACCGGCTTTGAATGTTATTATTTGATTGAATGGCCAATaacagtggttatc

Function

GO:

id name namespace
GO:0097124 cyclin A2-CDK2 complex cellular_component
GO:0005854 nascent polypeptide-associated complex cellular_component
GO:0030289 protein phosphatase 4 complex cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044978 True 2689 lncRNA 0.34 2 16644124 16648039

Neighbor

gene id symbol gene type direction distance location
XLOC_022227 CR318668.1 coding downstream 81963 16561233 ~ 16562161 (-)
XLOC_022226 NA coding downstream 125278 16516982 ~ 16518846 (-)
XLOC_022225 si:dkeyp-100a5.4 coding downstream 158276 16479489 ~ 16485848 (-)
XLOC_022224 BX511184.1 coding downstream 692148 15946154 ~ 15951976 (-)
XLOC_022223 mrgbp coding downstream 727733 15899693 ~ 15916391 (-)
XLOC_022229 sdcbp2 coding upstream 582 16648621 ~ 16682186 (-)
XLOC_022230 fkbp1ab coding upstream 40381 16688420 ~ 16692312 (-)
XLOC_022231 NA coding upstream 45539 16693578 ~ 16709238 (-)
XLOC_022232 si:ch211-224l10.4 coding upstream 71704 16719743 ~ 16737161 (-)
XLOC_022233 AL732515.1 coding upstream 96743 16744782 ~ 16746423 (-)
XLOC_022221 NA non-coding downstream 879806 15696527 ~ 15764318 (-)
XLOC_022220 NA non-coding downstream 947075 15690531 ~ 15697049 (-)
XLOC_022235 NA non-coding upstream 202797 16850836 ~ 16852947 (-)
XLOC_022237 NA non-coding upstream 313230 16961269 ~ 17004783 (-)
XLOC_022239 CR318674.1 non-coding upstream 396255 17044294 ~ 17046384 (-)

Expression


Co-expression Network