XLOC_022229 (sdcbp2)


Basic Information

Item Value
gene id XLOC_022229
gene name sdcbp2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16648621 ~ 16682186 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043876
TTGCAGGAAGTAAACAGCTACTAAACCACAGAAACTCAGTCACGCACTTTACTCTCGATCACCTCCCCTTCTCAGTGTTCACTTCTGCTCCAACCTAAAGAGGAAAGGGTCCCGTTTACTGTGCTCGGCTTGTTTACATTCCTTCTCATCACATTAAACCCATTTCTTCAGAAGTCGCTTGTTTGAAAGCAGAAAGgATGTCGTTGTACCCATCGCTAGAGGACCTTAAAGTGGACAAGGTCATTAGGGCACAATCCCAGTTTGCTAATGCCACTTCCAGCACTCCAGCCATCACTCAGGGTGCTTACCAGCCACAGCCTGCCACACAGGGGATGCCAAGCTCAActctATACCCCAATCTGGAGGAGCTGGGAGACTACATGGGACTCAGTCTGAACAGCGATGAGGTCCAGAGAAACCTTGCACTGGTCCCAGTGGCTACTCAAGTGGCAGTGCCAAGCTCAGTGGGTGGCATGGTGCGTCCCGTGACTGGAGCAGACATGGGCATCAGGAGGGCAGAGATTCGCCCGGGCCTACGAGAGGTCATTCTCTGCAAAGACCAGGAGGGAAAGGTCGGCCTACGTCTCAGAGATATCGATAATGGAGTGTTTGTGCAGCTGGTGCAAGCCAACTCTCCAGCGGCACTGGCTGGTCTGCGTTTTGGAGATCAGGTTCTGCAGATTAACGGGCAGAACGTTGCTGGCTGGAATTCAGATAAGGCCCATAAAGCTCTGAAGGCAGCAGCAGAACAGCGCATCGAGCTCATCGTTCGAGACAGACCATTCCAGCGCACAATCACCATGCACAAGGATAGCTCTGGCCATGTGGGCTTTATCTTCAAATCTGGGCGCATCACATCTCTAGTGAAGGACGGTTCTGCTGCTCGTAACGGCCTGCTCACCGAACATTACATCTGTGAGATCAACGGCCAGAACGTCATTGGACTCAAGGACACTCAGATTAAGGACATCTTGACCACATCTCCTACTGCCATGACCATCACCATCATGCCTAAATTCATCTTTGAACACATGATCAAGAaGATGTCAGGCGGCCTGCTGAAGTCCTCAATGGATCACTCTGTGCCTGAGGTCTGAACACAGGAGACCATGCAAAAACCCCCTTTCCACAATGCCTACAATCTCTAGCCTTCCCACTGGAGCCTTCAGCACAGGGCTAGCCTATCACTGATTGGATAAGACCTTCTCAATCACATTCATTTagaacatggaaaaaaaactgcCTTTTTCTATTTCACCTGTTGGCCGTTATCATTCTGCCTTCTAGTTCTTGATTCTGTCCTTCCATGTCATCGTGCCATTGTTTAATTACTGTCATATTACATGTTATACAATAATAATCCATCGCCACTCTTgaaatattagcattattatctgattatttttactttagcTGGGAGGCAGGGGGCTAAAAAATGAATCTGAGCTTCCTTTCTGAAAGGCTTCAACACTTCTAACTTCTCTATTCCTCCCACTATGCACAaacactttgtttttgttttttttattcatatttttaacttGTATATGCCAAGACAGCTGTACTCTGCCAGAAAGGATCCTGGGCCAGAATTTATAATACAACAACTCATTTCTTATTGATTCATAATGTTTTTATAGATGTTTAATCTTTCATAATATTCTATCATTATCCTGTAAATGTTAGTGTCTCTAAAATTTATATACGAATGTAACCTGAAGACtgaaattattacaaaaataaatcatcCTGGTGATACCATTGGAATGTAGTCAAcggtaatctttaaaaaaaaaaaaaacgatttaaaACAAATGACTGAAAGTCATCCAAAGTAGCAAGAAAGGCTTTGTTCACCATGCTGTTTAATATAGATCTTTTACAGAGTGATGAAGGTATAACAGCCATGTGTTGCAGTGATGTTTATACATACTCATATCACCATTAAAATATTATTCTACACAAAAAATATTGAGACACTTTGAAACATTGCTGGGCTTACAGGATTGTTTCCATTTTTCTGATTGATCTTATACTGTTAGTTTAGACAATAGACACAATTGAATAGCCAGATGAAGAATGTAAACATCATTGGAATTACCAATtagaaaaacaagcaaacaaacaaacaaactcaaagGTAGCTCTGTAAGATCTAATATTCTAGGCACACTTATAAAATCCTGCTTAACAGATACTGAACTACTGGTGTAAGTCAGCTTTCCAAACATTTCAGTATTCATTCTTTAGGAGTCAACTTACAGAACAAAAGGTGTTGATGATGTACAACAATAACCTAACATTTTAAACATCTGTTTATTGCAGGAGTGagttattaagttattttatttgtgtaatttacTTTGCCTTATATCATTGCAAAAATTTGGAAGAaagacaaatatatttttaatacaatctAAATTATTCTTGTTCCTCTATTAAATGTCATTTCTTACAAAACTTTGATGCTTCAAAACACCCATAAATAAAGGGATCCAAAAATAA
>TCONS_00043877
taggATGTCGTTGTACCCATCGCTAGAGGACCTTAAAGTGGACAAGGTCATTAGGGCACAATCCCAGTTTGCTAATGCCACTTCCAGCACTCCAGCCATCACTCAGGGTGCTTACCAGCCACAGCCTGCCACACAGGGGATGCCAAGCTCAActctATACCCCAATCTGGAGGAGCTGGGAGACTACATGGGACTCAGTCTGAACAGCGATGAGGTCCAGAGAAACCTTGCACTGGTCCCAGTGGCTACTCAAGTGGCAGTGCCAAGCTCAGTGGGTGGCATGGTGCGTCCCGTGACTGGAGCAGACATGGGCATCAGGAGGGCAGAGATTCGCCCGGGCCTACGAGAGGTCATTCTCTGCAAAGACCAGGAGGGAAAGGTCGGCCTACGTCTCAGAGATATCGATAATGGAGTGTTTGTGCAGCTGGTGCAAGCCAACTCTCCAGCGGCACTGGCTGGTCTGCGTTTTGGAGATCAGGTTCTGCAGATTAACGGGCAGAACGTTGCTGGCTGGAATTCAGATAAGGCCCATAAAGCTCTGAAGGCAGCAGCAGAACAGCGCATCGAGCTCATCGTTCGAGACAGACCATTCCAGCGCACAATCACCATGCACAAGGATAGCTCTGGCCATGTGGGCTTTATCTTCAAATCTGGGCGCATCACATCTCTAGTGAAGGACGGTTCTGCTGCTCGTAACGGCCTGCTCACCGAACATTACATCTGTGAGATCAACGGCCAGAACGTCATTGGACTCAAGGACACTCAGATTAAGGACATCTTGACCACATCTCCTACTGCCATGACCATCACCATCATGCCTAAATTCATCTTTGAACACATGATCAAGAaGATGTCAGGCGGCCTGCTGAAGTCCTCAATGGATCACTCTGTGCCTGAGGTCTGAACACAGGAGACCATGCAAAAACCCCCTTTC
>TCONS_00043878
GGATGCTGCTTTGTTTTCCCTCATGTTCATGCTGTGacaattgtgtgtgtttttttctaggATGTCGTTGTACCCATCGCTAGAGGACCTTAAAGTGGACAAGGTCATTAGGGCACAATCCCAGTTTGCTAATGCCACTTCCAGCACTCCAGCCATCACTCAGGGTGCTTACCAGCCACAGCCTGCCACACAGGGGATGCCAAGCTCAActctATACCCCAATCTGGAGGAGCTGGGAGACTACATGGGACTCAGTCTGAACAGCGATGAGGTCCAGAGAAACCTTGCACTGGTCCCAGTGGCTACTCAAGTGGCAGTGCCAAGCTCAGTGGGTGGCATGGTGCGTCCCGTGACTGGAGCAGACATGGGCATCAGGAGGGCAGAGATTCGCCCGGGCCTACGAGAGGTCATTCTCTGCAAAGACCAGGAGGGAAAGGTCGGCCTACGTCTCAGAGATATCGATAATGGAGTGTTTGTGCAGCTGGTGCAAGCCAACTCTCCAGCGGCACTGGCTGGTCTGCGTTTTGGAGATCAGGTTCTGCAGATTAACGGGCAGAACGTTGCTGGCTGGAATTCAGATAAGGCCCATAAAGCTCTGAAGGCAGCAGCAGAACAGCGCATCGAGCTCATCGTTCGAGACAGACCATTCCAGCGCACAATCACCATGCACAAGGATAGCTCTGGCCATGTGGGCTTTATCTTCAAATCTGGGCGCATCACATCTCTAGTGAAGGACGGTTCTGCTGCTCGTAACGGCCTGCTCACCGAACATTACATCTGTGAGATCAACGGCCAGAACGTCATTGGACTCAAGGACACTCAGATTAAGGACATCTTGACCACATCTCCTACTGCCATGACCAT

Function

symbol description
sdcbp2 Enables phosphatidylinositol-3,4-bisphosphate binding activity and syndecan binding activity. Acts upstream of or within several processes, including epiboly involved in gastrulation with mouth forming second; response to hypoxia; and synapse assembly. Predicted to be active in cytoplasm and plasma membrane. Is expressed in gill; oocyte; and spinal cord. Orthologous to several human genes including SDCBP2 (syndecan binding protein 2).

GO:

id name namespace
GO:0042246 tissue regeneration biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0007416 synapse assembly biological_process
GO:0001666 response to hypoxia biological_process
GO:0005886 plasma membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0043325 phosphatidylinositol-3,4-bisphosphate binding molecular_function
GO:0045545 syndecan binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3727 Enables phosphatidylinositol-3,4-bisphosphate binding activity and syndecan binding activity. Acts upstream of or within several processes, including epiboly involved in gastrulation with mouth forming second; response to hypoxia; and synapse assembly. Predicted to be active in cytoplasm and plasma membrane. Is expressed in gill; oocyte; and spinal cord. Orthologous to several human genes including SDCBP2 (syndecan binding protein 2).

Ensembl:

ensembl_id ENSDARG00000012513

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043876 False 2508 mRNA 0.41 9 16648621 16682186
TCONS_00043877 False 934 mRNA 0.53 8 16650002 16666583
TCONS_00043878 True 864 mRNA 0.53 7 16652084 16666640

Neighbor

gene id symbol gene type direction distance location
XLOC_022228 NA coding downstream 582 16644124 ~ 16648039 (-)
XLOC_022227 CR318668.1 coding downstream 86460 16561233 ~ 16562161 (-)
XLOC_022226 NA coding downstream 129775 16516982 ~ 16518846 (-)
XLOC_022225 si:dkeyp-100a5.4 coding downstream 162773 16479489 ~ 16485848 (-)
XLOC_022224 BX511184.1 coding downstream 696645 15946154 ~ 15951976 (-)
XLOC_022230 fkbp1ab coding upstream 6234 16688420 ~ 16692312 (-)
XLOC_022231 NA coding upstream 11392 16693578 ~ 16709238 (-)
XLOC_022232 si:ch211-224l10.4 coding upstream 37557 16719743 ~ 16737161 (-)
XLOC_022233 AL732515.1 coding upstream 62596 16744782 ~ 16746423 (-)
XLOC_022234 si:dkey-63j12.4 coding upstream 158386 16840572 ~ 16843649 (-)
XLOC_022221 NA non-coding downstream 884303 15696527 ~ 15764318 (-)
XLOC_022235 NA non-coding upstream 168650 16850836 ~ 16852947 (-)
XLOC_022237 NA non-coding upstream 279083 16961269 ~ 17004783 (-)
XLOC_022239 CR318674.1 non-coding upstream 362108 17044294 ~ 17046384 (-)

Expression


Co-expression Network