XLOC_022231


Basic Information

Item Value
gene id XLOC_022231
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16693578 ~ 16709238 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044723
TAAGAACCACGCCCACCTTACGATCAGTATAAGAGGCAGTAGAAAACTATAACGGGCAACTTCTCCATAAGCTGCTGAACGATGGCCAACGGCACTGGGAATGGACGAATGGAAAAGCAAACCGATCACAGTATCGCCTGTGCCACGGAAAATGACGACAACCAACCGAAAGAAGGCATCCCTTTGTCCAGGAAACTGTGCTATGCCATTGGAGGAATGCCTTATCAAATGACTGCAAACGCCAAGGGCTTTTTCATGCAGATCTTTTTACTGGATGTTGTGAAAATGGGAGCATTTTATGCATCCCTCATTCTCTTCCTCGGTCGAGCCTGGGATGCTGTTACAGATCCTCTTATTGGATATGCTGTGAGCAAAAGTGGCCGGACCAGAATTGGCAAACTCATTCCTTGGATTGTGTTCACCATGCCGCTCGGGATCCTGTCATACATCATGCTCTGGTATACCCCACAGGACACCATGTCCCCTGCCTTCAGTTTCAGCTGGTACTTCATATGGTGTTGTTTGTTTGACACCTTTATGAGTTGCTACCATGTGCCATATTCCTCCCTAAACATGTTTCTTGGGGGAAATCAGAAGGATCGAGACTCAGCTACTGGATACAGAATGGGCATGGAAGTGTTCGCCACACTGGCAGGAGCCACCATTCAGGGGCAGATAGTCGGGGTTCACCATGCCAAGAGAACACACGATTGCAGTTTACAGAACAGCACGCAAGAGCTTTCCGGAAACTACACTGGCCCACTGGATGGCATTTCTGACACTTTACAAAATACAAGAAGAGCCTATTTGACTGGCGCACTTGTGTTAGGAATGCTGTACTTTCTGTGCTGCCTCATACTTTTTCTTGGAGTGAAGGAACAGTTGGCGCCTCTGAGTAACCTGGACCGCATAAATGTCCCCTATCTAACCGGAATGAAGATGGTTGTGGGACACACTCCATATGTGCGGCTTGTGTTTGGCTTCCTCTTTTCTTCGCTAGCCTTTCAGATGGCTCAGGGGAATTTTGCCCTCTTCTGTACTCATGCAGCAAATATGGGAGGATATTTCCAGCATCTTGTTCTTATATTACTGACATCAGCGACAATATCCATCCCAATGTGGCAGACAATATTAGTCAAAATAGGAAAGAAGACCACCATATTCATCGGCCTTTCAGTTTATATCCCAGCTCTAACTGTAATATCTCTAGTGAACAGTAATTTACCCGTCTTCATTATTATGTCGGTGATATCTGGCACAAGTCTGGCAGCCCTCTATCTACTCCCTTGGTCGATGCTGCCAGATGTAGTGGATGACTTTAAAGTCAAGAACCCGTTGTGCCAGGATCTAGAGCCACTGTTCTACTCCTGCTATGTGTTCTTTAACAAATTCGGAGGAGGATTGTCTGTTGGAGTGTCCACCTTGGTACTACACTTTGTAGGATACAAGCCTGGAGCTTGTAAACACAATGAAAAGGTCATTTACGCACTCCGGATTCTCTTTGCCCCTGTGCCCATCTGCCTGATTCTCATTGGCATGGTGCTTTTTTACTTCTATCCCATCAATGAAGAGCGACGGCGGAAAATCCAGGAAGCTTTAAGCAAAGCAGGGACAGAGAACGGCTTGAAAGGAGAAGAAGAAATAATTCTATGAAGAAATCAGTGACTGTCTCTACTTTTGTAACTTTGTAGCAGCTATTGATCATGAACATGCTTTGCTTCATCTCAGTGTAAAGGttttgggatttttttaaagTCCTGCTCAAGGGGACCCCGACTCTTTTTAAAAGTCTCACTAATCTTACAGACTCATTTCCGGGCATGGAGATCTCTTCTAATGAGCTGACAAGATGAATAAAAAGACATTCAAGCCATACAGTGCTGCAAGGCACTCAGGACAAtttaaaaacattagtgtgcttaaaggtgcagtgtgtattTCTTCACCATATCCAGACAAATAGATTGATGTGAGTGTAAACAGCACTTATatttaacagttgacagtttaaTGACACAATGATTACTAGATTACTAGAGTTACTAGATTACtacagttcagatgcaaaaacttatTGCCATCTGTAATGTTCctataaagtttttgtttttctcctcctgtttatgttgttatttcactttaaatgcaaagaaaataacCTATTTGTTGTGCAGAGAGTAAATATTACTGAAACTACACACGTGataaaaaagctcattttagttgaaaatttcagacagcacttagaggttttagcatttaaactcttcatatatatagtACTAACTAGGAAAATAAGGAGACAAAACTTTGAAGTTGGCTTTCGAAGGTTTTAAATAGGCTAGTTCAGAAGAGTTTCTAATATATTTCTGCCATGATTAAGTACAGAGCTAGGATATTTGTTACTAAAGTTTTATCTTTCAAGTCggatttaacatatttaataaaaacttttagCATGTAGAATGTTTCTACTATGATTCATCACATTGTcccaaatagacagacagacacatatatGTTACTAGCAAGTATTACCAAGTTTCTGGCATGATTTAAAATAGCAATGctaaaatgtagcatttttgCATGTACAGTCACATAAATAGCATGATTTAATACACTTCAAAAAGAAGGGTTTAGGACAAAGCATGATTTAACatactgcaatttttttttttttttttacatgggagGGATGtgcaatatttaaattaaatatacttgtaagtattttattattatagttagtCATTGAGAATTCAGTCATTTGTATTTTcctgctcaaaaaataaaaaataagtaaataaaaaatcaggAATCAGTTATGGTGGTGCTATGTGCAAAACAATCTTAAGCGGAAGCGGTTATCAAATAGCTGTACTACTCTAGAACTAAACTTGAAAATTAGCTAATGTTAGCTTTGTTTGATTCTTTTGGGTGAAGAAATCAGTGAAATATCTGTTCTTCAGcagttaatctttattttttgcaaaatcgAACCAACATTTCAGTTGGGCTGGGCTGTATGACATTATCTTTTTGGCACTGGGCTGTATTACAGCATATATTTTTGGCACTGGGCTTTTTAAGAATTAAAGCCTGGATGAAGTCTGAATGAAGCAGTGACCTCCGGGACAAGACTGCTGTTGCAATTGCTGTCCTCTGGTCTACTTTTTCACATACCTAAAGCTACACAGACCCTTACAATATGTGTGCATCCCAAGTTGCGTACTTGCACagtattctacgccattttgtagtataaatggtGTGTGCAGTGTATTCACAGTCAGAGAAAATTCTAAAAAGTGTACTTGAAATACCTGGATGATGTATTTATTCAAACATGAGTAAGGAATGTTGAACACTCACTGGTCACAGATTTGCTCACGCAGTTGAAGTGAAAGGAGCTATAAGTAGTAAAATTGGATTATTTTGCATTGtgcaagcaaaaataaaaaggCCCTATTTTGTAAAGTTCGTAAAATATTATTAAGACTTCCATTTGGATAACTCTAAACCCATACTCTATGGCTGAGCGTGTAAGTGCACAGTTTATACATACTGTACAGTGTTCATTTGGAATGCAACTAATGTGTTATTGCCCCCTGCTGGACATTTTACACACTACACATCTGACATACATGAAACATGAAACATTATGAACTTACACACTATGTACCATCTAtgaaaatataatgtaatttacaCCCGAATCCTTTCAAAGCGTTTACTCTCTGAACTGACATAGGCCTACAGCTTCAAAGAGATATAggggcatagggatgagcccttctgaATGGAACGCACTGATGTGACACCAAACAACTCCTTTGTGCAAAGGTTCAAAGTGTCTTTCTGTTGTACCCTTCTAAATTCTTCATCCTGAAGAGCCTTTTACAGTGACCAGTTTTGAGCACTTGAGATTGGAATGACACTTCAATATGGCAGCCCTGAGTGTTTTTCACTCTGCAGTGCCTCTCGGAGAAtgatcaagatgaaaagtcctgacaccattgtttatgaacaagatattCAAATGGCTTTGTTATGTTTTCATAATGACTCTGTACCTTTTTTCCAATGCaataaagtcagattttggtggcACCTCC
>TCONS_00044979
ATGGAAAAGCAAACCGATCACAGTATCGCCTGTGCCACGGAAAATGACGACAACCAACCGACTACTTCAACTTTTTCCATTGTTAACAAAGAAGGCATCCCTTTGTCCAGGAAACTGTGCTATGCCATTGGAGGAATGCCTTATCAAATGACTGCAAACGCCAAGGGCTTTTTCATGCAGATCTTTTTACTGGATGTTGTGAAAATGGGAGCATTTTATGCATCCCTCATTCTCTTCCTCGGTCGAGCCTGGGATGCTGTTACAGATCCTCTTATTGGATATGCTGTGAGCAAAAGTGGCCGGACCAGAATTGGCAAACTCATTCCTTGGATTGTGTTCACCATGCCGCTCGGGATCCTGTCATACATCATGCTCTGGTATACCCCACAGGACACCATGTCCCCTGCCTTCAGTTTCAGCTGGTACTTCATATGGTGTTGTTTGTTTGACACCTTTATGAGTTGCTACCATGTGCCATATTCCTCCCTAAACATGTTTCTTGGGGGAAATCAGAAGGATCGAGACTCAGCTACTGGATACAGAATGGGCATGGAAGTGTTCGCCACACTGGCAGGAGCCACCATTCAGGGGCAGATAGTCGGGGTTCACCATGCCAAGAGAACACACGATTGCAGTTTACAGAACAGCACGCAAGAGCTTTCCGGAAACTACACTGGCCCACTGGATGGCATTTCTGACACTTTACAAAATACAAGAAGAGCCTATTTGACTGGCGCACTTGTGTTAGGAATGCTGTACTTTCTGTGCTGCCTCATACTTTTTCTTGGAGTGAAGGAACAGTTGGCGCCTCTGAGTAACCTGGACCGCATAAATGTCCCCTATCTAACCGGAATGAAGATGGTTGTGGGACACACTCCATATGTGCGGCTTGTGTTTGGCTTCCTCTTTTCTTCGCTAGCCTTTCAGATGGCTCAGGGGAATTTTGCCCTCTTCTGTACTCATGCAGCAAATATGGGAGGATATTTCCAGCATCTTGTTCTTATATTACTGACATCAGCGACAATATCCATCCCAATGTGGCAGACAATATTAGTCAAAATAGGAAAGAAGACCACCATATTCATCGGCCTTTCAGTTTATATCCCAGCTCTAACTGTAATATCTCTAGTGAACAGTAATTTACCCGTCTTCATTATTATGTCGGTGATATCTGGCACAAGTCTGGCAGCCCTCTATCTACTCCCTTGGTCGATGCTGCCAGATGTAGTGGATGACTTTAAAGTCAAGAACCCGTTGTGCCAGGATCTAGAGCCACTGTTCTACTCCTGCTATGTGTTCTTTAACAAATTCGGAGGAGGATTGTCTGTTGGAGTGTCCACCTTGGTACTACACTTTGTAGGATACAAGCCTGGAGCTTGTAAACACAATGAAAAGGTCATTTACGCACTCCGGATTCTCTTTGCCCCTGTGCCCATCTGCCTGATTCTCATTGGCATGGTGCTTTTTTACTTCTATCCCATCAATGAAGAGCGACGGCGGAAAATCCAGGAAGCTTTAAGCAAAGCAGGttttgcacaAGATTCTTGGGAAGTTGCAATAGCTGTA
>TCONS_00043880
CACGCCCACCTTACGATCAGTATAAGAGGCAAAGGCATCCCTTTGTCCAGGAAACTGTGCTATGCCATTGGAGGAATGCCTTATCAAATGACTGCAAACGCCAAGGGCTTTTTCATGCAGATCTTTTTACTGGATGTTGTGAAAATGGGAGCATTTTATGCATCCCTCATTCTCTTCCTCGGTCGAGCCTGGGATGCTGTTACAGATCCTCTTATTGGATATGCTGTGAGCAAAAGTGGCCGGACCAGAATTGGCAAACTCATTCCTTGGATTGTGTTCACCATGCCGCTCGGGATCCTGTCATACATCATGCTCTGGTATACCCCACAGGACACCATGTCCCCTGCCTTCAGTTTCAGCTGGTACTTCATATGGTGTTGTTTGTTTGACACCTTTATGAGTTGCTACCATGTGCCATATTCCTCCCTAAACATGTTTCTTGGGGGAAATCAGAAGGATCGAGACTCAGCTACTGGATACAGAATGGGCATGGAAGTGTTCGCCACACTGGCAGGAGCCACCATTCAGGGGCAGATAGTCGGGGTTCACCATGCCAAGAGAACACACGATTGCAGTTTACAGAACAGCACGCAAGAGCTTTCCGGAAACTACACTGGCCCACTGGATGGCATTTCTGACACTTTACAAAATACAAGAAGAGCCTATTTGACTGGCGCACTTGTGTTAGGAATGCTGTACTTTCTGTGCTGCCTCATACTTTTTCTTGGAGTGAAGGAACAGTTGGCGCCTCTGAGTAACCTGGACCGCATAAATGTCCCCTATCTAACCGGAATGAAGATGGTTGTGGGACACACTCCATATGTGCGGCTTGTGTTTGGCTTCCTCTTTTCTTCGCTAGCCTTTCAGATGGCTCAGGGGAATTTTGCCCTCTTCTGTACTCATGCAGCAAATATGGGAGGATATTTCCAGCATCTTGTTCTTATATTACTGACATCAGCGACAATATCCATCCCAATGTGGCAGACAATATTAGTCAAAATAGGAAAGAAGACCACCATATTCATCGGCCTTTCAGTTTATATCCCAGCTCTAACTGTAATATCTCTAGTGAACAGTAATTTACCCGTCTTCATTATTATGTCGGTGATATCTGGCACAAGTCTGGCAGCCCTCTATCTACTCCCTTGGTCGATGCTGCCAGATGTAGTGGATGACTTTAAAGTCAAGAACCCGTTGTGCCAGGATCTAGAGCCACTGTTCTACTCCTGCTATGTGTTCTTTAACAAATTCGGAGGAGGATTGTCTGTTGGAGTGTCCACCTTGTCGGACTGTTTCATACAGTatgtATGTTGccgtttatttattttCTTTGTAGGATACAAGCCTGGAGCTTGTAAACACAATGAAAAGGTCATTTACGCACTCCGGATTCTCTTTGCCCCTGTGCCCATCTGCCTGATTCTCATTGGCATGGTGCTTTTTTACTTCTATCCCATCAATGAAGAGCGACGGCGGAAAATCCAGGAAGCTTTAAGCAAAGCAGGGTATGTGTTTCTGTCAGTTTGA
>TCONS_00043881
CTGAACGATGGCCAACGGCACTGGGAATGGACGAATGGAAAAGCAAACCGATCACAGTATCGCCTGTGCCACGGAAAATGACGACAACCAACCGCAGAAAGAAGGCATCCCTTTGTCCAGGAAACTGTGCTATGCCATTGGAGGAATGCCTTATCAAATGACTGCAAACGCCAAGGGCTTTTTCATGCAGATCTTTTTACTGGATGTTGTGAAAATGGGAGCATTTTATGCATCCCTCATTCTCTTCCTCGGTCGAGCCTGGGATGCTGTTACAGATCCTCTTATTGGATATGCTGTGAGCAAAAGTGGCCGGACCAGAATTGGCAAACTCATTCCTTGGTTAGTGTACTGGGATTGTGTTCACCATGCCGCTCGGGATCCTGTCATACATCATGCTCTGGTATACCCCACAGGACACCATGTCCCCTGCCTTCAGTTTCAGCTGGTACTTCATATGGTGTTGTTTGTTTGACACCTTTATGAGTTGCTACCATGTGCCATATTCCTCCCTAAACATGTTTCTTGGGGGAAATCAGAAGGATCGAGACTCAGCTACTGGATACAGAATGGGCATGGAAGTGTTCGCCACACTGGCAGGAGCCACCATTCAGGGGCAGATAGTCGGGGTTCACCATGCCAAGAGAACACACGATTGCAGTTTACAGAACAGCACGCAAGAGCTTTCCGGAAACTACACTGGCCCACTGGATGGCATTTCTGACACTTTACAAAATACAGAGAAGAGCCTATTTGACTGGCGCACTTGTGTTAGGAATGCTGTACTTTCTGTGCTGCCTCATACTTTTTCTTGGAGTGAAGGAACAGTTGGCGCCTCTGAGTAACCTGGACCGCATAAATGTCCCCTATCTAACCGGAATGAAGATGGTTGTGGGACACACTCCATATGTGCGGCTTGTGTTTGGCTTCCTCTTTTCTTCGCTAGCCTTTCAGGTCAGatGGGAATTTTGCCCTCTTCTGTACTCATGCAGCAAATATGGGAGGATATTTCCAGCATCTTGTTCTTATATTACTGACATCAGCGACAATATCCATCCCAATGTGGCAGACAATATTAGTCAAAATAGGAAAGAAGACCACCATATTCATCGGCCTTTCAGTTTATATCCCAGCTCTAACTGTAATATCTCTAGTGAACAGTAATTTACCCGTCTTCATTATTATGTCGGTGATATCTGGCACAAGTCTGGCAGCCCTCTATCTACTCCCTTGGTCGATGCTGCCAGATGTAGTGGATGACTTTAAAGTCAAGAACCCGTTGTGCCAGGATCTAGAGCCACTGTTCTACTCCTGCTATGTGTTCTTTAACAAATTCGGAGGAGGATTGTCTGTTGGAGTGTCCACCTTGGTACTACACTTTGTAGGATACAAGCCTGGAGCTTGTAAACACAATGAAAAGGTCATTTACGCACTCCGGATTCTCTTTGCCCCTGTGCCCATCTGCCT

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0048468 cell development biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0007517 muscle organ development biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:1990399 epithelium regeneration biological_process
GO:0055001 muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0051239 regulation of multicellular organismal process biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010468 regulation of gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0045595 regulation of cell differentiation biological_process
GO:2000026 regulation of multicellular organismal development biological_process
GO:0043696 dedifferentiation biological_process
GO:0043697 cell dedifferentiation biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0050793 regulation of developmental process biological_process
GO:0007399 nervous system development biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0060284 regulation of cell development biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0060290 transdifferentiation biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0048699 generation of neurons biological_process
GO:0003310 pancreatic A cell differentiation biological_process
GO:0051960 regulation of nervous system development biological_process
GO:0005901 caveola cellular_component
GO:0044853 plasma membrane raft cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000009079

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044723 False 4118 lncRNA 0.39 14 16693578 16709238
TCONS_00044979 False 1566 lncRNA 0.46 15 16696124 16709130
TCONS_00043880 False 1527 processed_transcript 0.46 15 16696410 16709231
TCONS_00043881 True 1464 processed_transcript 0.47 13 16696519 16709164

Neighbor

gene id symbol gene type direction distance location
XLOC_022230 fkbp1ab coding downstream 1266 16688420 ~ 16692312 (-)
XLOC_022229 sdcbp2 coding downstream 11392 16648621 ~ 16682186 (-)
XLOC_022228 NA coding downstream 45539 16644124 ~ 16648039 (-)
XLOC_022227 CR318668.1 coding downstream 131417 16561233 ~ 16562161 (-)
XLOC_022226 NA coding downstream 174732 16516982 ~ 16518846 (-)
XLOC_022232 si:ch211-224l10.4 coding upstream 10505 16719743 ~ 16737161 (-)
XLOC_022233 AL732515.1 coding upstream 35544 16744782 ~ 16746423 (-)
XLOC_022234 si:dkey-63j12.4 coding upstream 131334 16840572 ~ 16843649 (-)
XLOC_022235 NA coding upstream 141598 16850836 ~ 16852947 (-)
XLOC_022236 cdc42l2 coding upstream 246947 16956185 ~ 16960972 (-)
XLOC_022224 BX511184.1 non-coding downstream 741602 15946154 ~ 15951976 (-)
XLOC_022221 NA non-coding downstream 929260 15696527 ~ 15764318 (-)
XLOC_022237 NA non-coding upstream 252031 16961269 ~ 17004783 (-)
XLOC_022239 CR318674.1 non-coding upstream 335056 17044294 ~ 17046384 (-)
XLOC_022240 BX927275.3 non-coding upstream 466866 17176104 ~ 17176218 (-)

Expression


Co-expression Network