XLOC_022232 (si:ch211-224l10.4)


Basic Information

Item Value
gene id XLOC_022232
gene name si:ch211-224l10.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 16719743 ~ 16737161 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043882
atggaAGCCTTTTATGCATCCCTCATTCTCTTCCTCGGTCGAGCTTGGGATGCTGTTACAGATCCTCTGGTTGGATATGCTGTGAGCAAAAGTGGCCGGACCAGAATTGGCAAACTCATACCTTGGATTGTGTTCACCATGCCGCTTGGGGTCCTGTCATACATCATGCTATGGTATACCCCACAGGACACCATGTCCCCTGCCTTCAGTTTCAGCTGGTACTTCATATGGTGTTGTGTATTTGACACCTTTATAAGTTGCCACCATGTGCCATATTCTTCACTAAACATGTTTTTAGGAGGGGATGAAAAGGACCGAGACTCAGCCACTGCTTATAGAATGGGTGTGGAAGTGTTCGCCACACTGGCAGCTTCTGCCATTCAGGGGCAAATAGTCGGGGTTCACCACGCCAAGAGGACACACACCTGCAGCTTGCAGAATAACACAGAAGAGCTTTCTGGAAACTACACTGACAAGCTGACTGACATATCCGAAATAGCTCTACAAAACACTAGAACAGCTTATTTGATTGCCGCAATAGTAATGGGAATACTGTACCTCATCTGCTGTCTAGTCCTTTTTTTCGGTGTAAAGGAGCAGGTGGCGCCTCTGAGTAACCTTGACAGCATTAAAGTTCCCTATCTAACTGGAATTAAGATGGTTGTGAGACACACTCCATATGTACGGCTTGTATTTGGATTCCTCTTTTCTTCACTAGCCTTTCAGGTGAACGTAGGAAATTTCGCTCTCTTCTGTACTCATGCAGCACATTTGGGATCATATTTCCAGCATTTTATTCTGATAACACTGGCGTCAGCAACAATATCCGTCCCAATGTGGCAGACGCTGTTGGTCAGAATAGGAAAGAAGACCACTATATTCCTCGGCCTTTCAATTTACATCCCAGCTCTCGTTGAGATAATCGTATCGAAGAGTAGTTTGACTACCTTGATTATCATGTCTGTGTTATCTGGCATAAGTCTTGCATCCATTTTTCTACTGCCTTGGTCGATGCTGCCAGATGTAGTGGACGACTTCAAAGTCAAGAACCCGTCGTTTCTGGATCTAGAGCCACTGTTCTACTCCTGCTATGTGTTCTTTAACAAATTTGGAGGAGGATTGTCTGTTGGAATATCTACCTTGGTTTTACACTTTGTGGGATACATACCTGGAGCTTGTAAACACAATTCAGAGGTCATTTATGCACTCTGGATTCTCTTCGCTCCTGTGCCTCTCGGCCTGTTGCTTATTGGCATGGTGATTTTTTACTTCTATCCCATTAATGAAGAGCAACGGCAGAAAATCCAGGAAGCGTTAAGGAACATAggGACAGAGCCCAACTCAAAAGAAGAGGAACTCGGCCTATGAAGTAATCACCTAGTATGTCACAAAACGATTTCACTTTAGTTACATTTCCTGATCCAGGAACTGCTAATAATGAACATGTTCAGATTCCCATGTCAGTAGAAAGTCACTTCATTACACATAGTGAAAGTTTCTCAGGAATGTTTTGGATGGACTCCAATGAATTTTAGTTATCTTAGTCATTTTACACACGCAAGTTaataaaaaagacattaaaaaacttttttgcaaAACTTGCCAATTCTAAAGACAAGGAAAAAAACATTAGTGATTTTGAATGTTGCTGTGTGTAAAGTCTTGATAATTGGCTCTGAAATATGTCAAAGTATTTCTTAATTAAAGAATGTCAAACTGTATGTCTATGTGCACTTGTATGCATATGAAACTGACTGATTATTATACGATAGAGACAATGCACACAGCTGGTCTTTGTCtctatatttttgtataaatttgaTATATTATAGTTTCTTTTACTGTAGCCTTTACCAAATCTTTGGATGACTATTGACTTCATTTCattgaaaaaagtaaataaattatgttccacaaaaccagtccacatgtgttttgtggacttgtaGACGGCATTTAACCGTGTCCCTGGTGGCATTCTCATAGcatggggtcagaggcgctctgttaagGGTTGTCTGAAGTCTGACTGGTTGGAATACAGCGGGTTGGAGGAAAGTTCTTACCCCAGGTgaaggagtttaagtatcttgagTTTTTGTTCACGAGTGTTGGttggatggaacgtgagattgacaggtgaatcggtgcagcagtaatgcggtcaatgtaccggtccgttgtggtaaagaaggagctgagccaaaagccAAAGCTCTCAATTTGCAGGTCAATCTACGTTCTTACTCTCCTCATGAGCTATGGGTCATGACcaaaaaggacaagatctcagatacaagtaCAAATGTGTTTCCCCTCGCAGGATGGCAGATCACACCCTTATAGATAGAGTGAGGAGCTCTatcacctgggaggagctcggagtaaagccgctgctcctccacatcgagagaagtcagctaaggtggctcatgcatctgtttcagatgtctTCTAGAA
>TCONS_00043883
AGACGGTCGACAATAGAGTGGATATGGATAATCAAAcagatgccaataaagaaaatgaGGACAGTCAGAAGGGCATCCCTTTCTCCAGGAAACTGTGCTATGCCATTGGAGGAATGCCTTATGAAATGACTATAACCGTCAAGGTCTTTTTCATGCAGATCTTTTTACTGGATGTTGTGAAGatggaAGCCTTTTATGCATCCCTCATTCTCTTCCTCGGTCGAGCTTGGGATGCTGTTACAGATCCTCTGGTTGGATATGCTGTGAGCAAAAGTGGCCGGACCAGAATTGGCAAACTCATACCTTGGATTGTGTTCACCATGCCGCTTGGGGTCCTGTCATACATCATGCTATGGTATACCCCACAGGACACCATGTCCCCTGCCTTCAGTTTCAGCTGGTACTTCATATGGTGTTGTGTATTTGACACCTTTATAAGTTGCCACCATGTGCCATATTCTTCACTAAACATGTTTTTAGGAGGGGATGAAAAGGACCGAGACTCAGCCACTGCTTATAGAATGGGTGTGGAAGTGTTCGCCACACTGGCAGCTTCTGCCATTCAGGGGCAAATAGTCGGGGTTCACCACGCCAAGAGGACACACACCTGCAGCTTGCAGAATAACACAGAAGAGCTTTCTGGAAACTACACTGACAAGCTGACTGACATATCCGAAATAGCTCTACAAAACACTAGAACAGCTTATTTGATTGCCGCAATAGTAATGGGAATACTGTACCTCATCTGCTGTCTAGTCCTTTTTTTCGGTGTAAAGGAGCAGGTGGCGCCTCTGAGTAACCTTGACAGCATTAAAGTTCCCTATCTAACTGGAATTAAGATGGTTGTGAGACACACTCCATATGTACGGCTTGTATTTGGATTCCTCTTTTCTTCACTAGCCTTTCAGGTGAACGTAGGAAATTTCGCTCTCTTCTGTACTCATGCAGCACATTTGGGATCATATTTCCAGCATTTTATTCTGATAACACTGGCGTCAGCAACAATATCCGTCCCAATGTGGCAGACGCTGTTGGTCAGAATAGGAAAGAAGACCACTATATTCCTCGGCCTTTCAATTTACATCCCAGCTCTCGTTGAGATAATCGTATCGAAGAGTAGTTTGACTACCTTGATTATCATGTCTGTGTTATCTGGCATAAGTCTTGCATCCATTTTTCTACTGCCTTGGTCGATGCTGCCAGATGTAGTGGACGACTTCAAAGTCAAGAACCCGTCGTTTCTGGATCTAGAGCCACTGTTCTACTCCTGCTATGTGTTCTTTAACAAATTTGGAGGAGGATTGTCTGTTGGAATATCTACCTTGGTTTTACACTTTGTGGGATACATACCTGGAGCTTGTAAACACAATTCAGAGGTCATTTATGCACTCTGGATTCTCTTCGCTCCTGTGCCTCTCGGCCTGTTGCTTA
>TCONS_00043884
TGTGAGCAAAAGTGGCCGGACCAGAATTGGCAAACTCATACCTTGGATTGTGTTCACCATGCCGCTTGGGGTCCTGTCATACATCATGCTATGGTATACCCCACAGGACACCATGTCCCCTGCCTTCAGTTTCAGCTGGTACTTCATATGGTGTTGTGTATTTGACACCTTTATAAGTTGCCACCATGTGCCATATTCTTCACTAAACATGTTTTTAGGAGGGGATGAAAAGGACCGAGACTCAGCCACTGCTTATAGAATGGGTGTGGAAGTGTTCGCCACACTGGCAGCTTCTGCCATTCAGGGGCAAATAGTCGGGGTTCACCACGCCAAGAGGACACACACCTGCAGCTTGCAGAATAACACAGAAGAGCTTTCTGGAAACTACACTGACAAGCTGACTGACATATCCGAAATAGCTCTACAAAACACTGTGAGAAAATGAATACCTCATTACTGTTGTCTCAAGCACATTAATCAGTTATCAGTTATAAGTTATTACTTTTCACTGTGAACTAAATGCAGCTGTTTGTCCTTACATTAATGATTTAGTGTAGTAGAATAAGATTATTCCTGGTGACTGTATATGCAGGGGCTAATTCTCAATAAATGTTGTGGTAGCATTGTAGCAAATGCACCCACTTAGGCTTCAAttatcatattgcaatatataatatataaataaattaaatattagcatcagcagtttttttttagcttattcCTAATTAATTTAGTTCAAATTATGAAAGGATGTTGCCATTTTTTTGCTGAATTATATTAAA
>TCONS_00043885
ACAATAGAGTGGATATGGATAATCAAAcagatgccaataaagaaaatgaGGACAGTCAGAAGGGCATCCCTTTCTCCAGGAAACTGTGCTATGCCATTGGAGGAATGCCTTATGAAATGACTATAACCGTCAAGGTCTTTTTCATGCAGATCTTTTTACTGGATGTTGTGAAGGTGAGTACAAAAGATTTGGTTTTGCAGCTGTCAGTGATGACCAAACAGATCAGGACCTCTAATATAACTGGATGTAAGTTTTTACACAGGATCACACGCACAcagtaaaacaatataactaactCATCTGTTCCTCATCTACCCAAATTCCATCTGTTCTTCATCCACCTTCATCTACTCAAgttcagaaaaaaatacattgggGAAAATCTTTTGCGGTTTTTATCACTACCACacactttagttttatttatataatgataGGCTAATAAAGGGCTGCACTGTGGCTCAGttattagtgctgtcacctcacagcaagaaggtcactggttcaagtcccggctggatcagttggcatttctgtgtgaagtttgcatgtttccccccgTGTTGgcaagggtttcctctgggtgctctgctctcccccacagtccaaagacatgcaccataggagagttggatgaactaaataggtcatagtgtatgagtgaatgtgagagtgtatgggatTTCCCGGTACTGGATTGCAactggatgggcatctgctgtgtaaaacatatgctgtaatagttggcggttcatcccactgtggcgacccctaagccgaaagaaaaattaattaataaactaattgcAATATTGAAATTGCACATACTCCTTCATGTGGTttcctttttttaagtaaatgtgcAACATGATATTCTATGATTAAATTGGAAATGTCATGTCATGTTATTTTTATCAGcttatccggggccgggtcgtgggggcagtagtcttaggagagaactctaGACTACTCTCTCCAGACACTTCATTTAGCTCCTATAGGGGATCCCGAGGAGTCCCCAGgcaagccgagagacatagtccctctagCGTGACCCCAAGGCCTCTCCTGGTGgtacatgcctggaacacctccctaggtaggagtcctgga

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000088762

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043882 False 2460 mRNA 0.42 12 16719743 16734009
TCONS_00043883 False 1431 mRNA 0.45 13 16722998 16737161
TCONS_00043884 False 785 lncRNA 0.39 4 16730519 16733929
TCONS_00043885 True 1116 lncRNA 0.43 2 16735911 16737152

Neighbor

gene id symbol gene type direction distance location
XLOC_022231 NA coding downstream 10505 16693578 ~ 16709238 (-)
XLOC_022230 fkbp1ab coding downstream 27431 16688420 ~ 16692312 (-)
XLOC_022229 sdcbp2 coding downstream 37557 16648621 ~ 16682186 (-)
XLOC_022228 NA coding downstream 71704 16644124 ~ 16648039 (-)
XLOC_022227 CR318668.1 coding downstream 157582 16561233 ~ 16562161 (-)
XLOC_022233 AL732515.1 coding upstream 7621 16744782 ~ 16746423 (-)
XLOC_022234 si:dkey-63j12.4 coding upstream 103411 16840572 ~ 16843649 (-)
XLOC_022235 NA coding upstream 113675 16850836 ~ 16852947 (-)
XLOC_022236 cdc42l2 coding upstream 219024 16956185 ~ 16960972 (-)
XLOC_022237 NA coding upstream 224108 16961269 ~ 17004783 (-)
XLOC_022226 NA non-coding downstream 200897 16516982 ~ 16518846 (-)
XLOC_022224 BX511184.1 non-coding downstream 767767 15946154 ~ 15951976 (-)
XLOC_022239 CR318674.1 non-coding upstream 307133 17044294 ~ 17046384 (-)
XLOC_022240 BX927275.3 non-coding upstream 438943 17176104 ~ 17176218 (-)

Expression


Co-expression Network