G289327


Basic Information

Item Value
gene id G289327
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67411658 ~ 67429546 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU328033
AATTATCTGACTTTTAAAATGAAATTCTGAACATATTCAATGTCTCCATAGTATGTGCACGCATTGCATTGAGTATGAAGGAGGTtcttatatataaaaaaaaatcagtatTGAGACAGTAATGTTGATTACACATTTTAGAGATTCACATTTAGACCTGACAGTTTTCCCTTTCATAGATAGATAGGCAGCATTGGAAAAGACAACGGGAGGAAACAGACCCTTACCCCCAACTAGCCAACTCATGGGCCCAATCCCAAATAGATCCCTAGACCCTATGCACTTGTGGAGAACTGAGTGGATTTGacaggtgtaagcaatatggtaATACCTTGTCGTTTTATCTGCTACAGGGAAGTTTCTCCATATTGCTTCTATCAATCAAATCCTCTCCGATCTCAACAAGTGCATAGGGTGTAGGGGTCCTTTAGTGATTGGGCCTATTCCCCCCTCCCAACCCCCTTTCCCAAACTGAAGGTGAGACTAGAGAACCGATACATAGACAAACACCAGTCAACTCATCTCTCAACACCAAAGACAGTAGAAGAAACCCAATATACCTCCTCGTTTTTAACAGACACTACATCTCCACCCCTGTGAACTTTCAAGTTTTCAAATCTGGGCCTCgtctactctccggctaccccTCCGTTACATCAATGTACTGAATCTTAGGTTTACAACAAAGCtatggtacactacatgaccaaaagtatgtggacacctgctcgtcgaacatctcattccaaaatcgtgggcattaatatggagttggtcctccttatgctgctataacagccttcactcttctgggaaggctttccactagatgttggaacattgctgcagggacttgcttccattcagccacaagtgcattagtgagatcgggcactgatgttgggcgattaggcctggcttgcagtcagtgttctaattcattccaaaggtgttcgatggggttgaggtcaggtctctgtgcaggccagttttCCCACACCAATCtcaataaaccatttctgtaaggacctcgctttgtgcaagggggcattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaaagttggaagcacagaatcgtctggaatgtcattgtatgcagttcccttcactggaactaaggggcctagtccgaaccatgaaaaacagccccagaccattattcca
>TU328032
AATTATCTGACTTTTAAAATGAAATTCTGAACATATTCAATGTCTCCATAGTATGTGCACGCATTGCATTGAGTATGAAGGAGGTtcttatatataaaaaaaaatcagtatTGAGACAGTAATGTTGATTACACATTTTAGAGATTCACATTTAGACCTGACAGTTTTCCCTTTCATAGATAGATAGGCAGCATTGGAAAAGACAACGGGAGGAAACAGACCCTTACCCCCAACTAGCCAACTCATGGGCCCAATCCCAAATAGATCCCTAGACCCTATGCACTTGTGGAGAACTGAGTGGATTTGacaggtgtaagcaatatggtaATACCTTGTCGTTTTATCTGCTACAGGGAAGTTTCTCCATATTGCTTCTATCAATCAAATCCTCTCCGATCTCAACAAGTGCATAGGGTGTAGGGGTCCTTTAGTGATTGGGCCTATTCCCCCCTCCCAACCCCCTTTCCCAAACTGAAGGTGAGACTAGAGAACCGATACATAGACAAACACCAGTCAACTCATCTCTCAACACCAAAGACAGTAGAAGAAACCCAATATACCTCCTCGTTTTTAACAGACACTACATCTCCACCCCTGTGAACTTTCAAGTTTTCAAATCTGGGCCTCgtctactctccggctaccccTCCGTTACATCAATGTACTGAATCTTAGGTTTACAACAAAGCtatggtacactacatgaccaaaagtatgtggacacctgctcgtcgaacatctcattccaaaatcgtgggcattaatatggagttggtcctccttatgctgctataacagccttcactcttctgggaaggctttccactagatgttggaacattgctgcagggacttgcttccattcagccacaagtgcattagtgagatcgggcactgatgttgggcgattaggcctggcttgcagtcagtgttctaattcattccaaaggtgttcgatggggttgaggtcaggtctctgtgcaggccagttttCCCACACCAATCtcaataaaccatttctgtaaggacctcgctttgtgcaagggggcattgtcatgctgaaacaggaaagggccttccccaaactgttgccacaaagttggaagcacagaatcgtctggaatgtcattgtatgcagtagtgacattcccttcactggaactaaggggcctagtccgaaccatgacaaacagcaccagaccattattcctccaccaccaaactttacagttggcactatgcattcgggcaggaagcgttcttctggcatcccCCAAACCCAGATTGATCCGTCGGTGAAGAGTGACTCACCAtccggggcagcaggtagcctagtggttagagcactggGCCAGTAAACTAAAGgtcgctggatcgaatccccgaactgacaaggtaaatatttgtcgttctgcccctgaacgaggcagttaactcactgttcctaggccgtcattgtaaataagaatattttcttaactgacttgcctagttaaataaaaataaaatctctagagaacgtgtttccactgctccaatgtCCAATGTCGGCAAACcttacaccactccagacgacacttggcattgcatatggtgatcttaggcttgtgtgcgtgcggctgctcggccatggagacCCATTTCTTGAAGCTCCTGACAGTTCTTGTGTtgccgttgcttccagaggcagtttggaact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328033 False 1203 lncRNA 0.44 3 67411658 67429546
TU328032 True 1699 lncRNA 0.45 2 67427823 67429546

Neighbor

gene id symbol gene type direction distance location
LOC110520443 LOC106586629 coding downstream 124698 67275729 ~ 67286960 (-)
LOC110520442 LOC106586628 coding downstream 175413 67224861 ~ 67236245 (-)
LOC110520437 LOC106586625 coding downstream 333010 67066357 ~ 67078648 (-)
rpe rpe coding downstream 388250 67020454 ~ 67023408 (-)
LOC110504514 NA coding downstream 664365 66732237 ~ 66747293 (-)
LOC110520451 LOC106586637 coding upstream 95055 67524601 ~ 67542329 (-)
LOC110520452 LOC106586638 coding upstream 116051 67545597 ~ 67568698 (-)
LOC110520453 LOC106586647 coding upstream 187944 67617490 ~ 67636658 (-)
LOC110520454 LOC106586643 coding upstream 255504 67685050 ~ 67706221 (-)
LOC118944713 LOC106592868 coding upstream 346865 67776411 ~ 67786849 (-)
G289325 LOC106586634 non-coding downstream 5529 67405694 ~ 67406129 (-)
G289323 NA non-coding downstream 6196 67404977 ~ 67405462 (-)
G289322 NA non-coding downstream 6868 67404567 ~ 67404790 (-)
G289321 NA non-coding downstream 7110 67403552 ~ 67404548 (-)
G289315 NA non-coding downstream 21468 67389635 ~ 67390190 (-)
G289337 NA non-coding upstream 4096 67433642 ~ 67433848 (-)
G289346 NA non-coding upstream 24868 67454414 ~ 67455126 (-)
G289356 NA non-coding upstream 45071 67474617 ~ 67478030 (-)
G289360 NA non-coding upstream 49643 67479189 ~ 67484662 (-)
G289371 LOC105911894 non-coding upstream 72067 67501613 ~ 67502129 (-)
G288578 NA other downstream 568777 66842671 ~ 66842881 (-)
G287112 NA other downstream 1831163 65579791 ~ 65580495 (-)
G287042 NA other downstream 1964375 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 2111241 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 2175750 65235180 ~ 65235908 (-)
G289678 NA other upstream 197286 67626832 ~ 67633493 (-)
G289653 LOC106607871 other upstream 454206 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 777044 68206330 ~ 68208674 (-)
G290542 NA other upstream 1149557 68579103 ~ 68580707 (-)
G290567 NA other upstream 1196786 68626332 ~ 68647620 (-)

Expression


Co-expression Network