G289676


Basic Information

Item Value
gene id G289676
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67624211 ~ 67631209 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU328483
CTTCATCCTCTCCTGTGAAGATGATAACTTCTCTTTAGCCATTTCACCAGCGGCATACAGCCGTCTCCGGAAAtcacacacatacgataacagGGACTGAGGAGGCTCGGGAGACTTCCAGTCATCCTGGAGAACAGATAAAAGTCCACGCACCCTATGTCCAAACACAAGGTCATTTGGACTGAAACCCGTGCTCTCCTGTGAAACCTCCCTAGCGGCTAACAGTAACCAAGGCAACCCCTCCTCCCAATCCTTATCCATCTCAGTACAATAAGCTCTCAATAAAGACTTTAGAGTTTGATGGAAACGTTCCAGTGCTCCTTGACTTTGCGCGTGATAGGCGCTAGACAAATTGTGTTTAATATGGAGCTGTTGAAGAACCTGACTAAACAGATTAGAGGTGAAATTCGATCCTTGATCACTCTGAATGACCTTAGGGATTCCAAACAATGAGAGAAACTGAGTCAAAGCTTTTAACACAGATTTAGTTGTGATAGATCGGAGAGGATAGGCAGCAGGAAACCTAGTGGTCTGAcacatcacagtgaacaggtaacTGCTACCCTTTTTAGAACGAGGCAGGGGACCCACACAGTCAATAatcagatactcaaaaggttgGCTGAGTACAGGAATAGGAAACAATGGTACCGGTTTAATAGCTTGATTAGGCTTACCAGTTAATTGACAGGTGTGACAAGTTTTTATAAAATCAGAAACATCCCTCTTTAATCTAGGCCAAAAGAAATGTCTTAAAATGCGATTGTAGGTTTTCCTCACCCCCATATGTCCAGCAACGTCGCTGTGGGAAGTTTCCAACACCAAGTCACGAAGCTTAACtggtacaacaacctgactaattgCCTCCCCCAGAAAACAACTATCATGAGACACCCACTTTCTCATCAGGACATCCTCTTGGAGAAAATAGCCATGGGCGACATCTCCCAACTGTTCTACAGGCACAATTTGGTCACGCAACTCTTCTAACGTGGGGTCATCCCGTTGCGCATTAATTAAATCTGAGCGGGTTACAGATAACGGAATAACAGGGAAAACAGTG
>TU328485
CTTCATCCTCTCCTGTGAAGATGATAACTTCTCTTTAGCCATTTCACCAGCGGCATACAGCCGTCTCCGGAAAtcacacacatacgataacagGGACTGAGGAGGCTCGGGAGACTTCCAGTCATCCTGGAGAACAGATAAAAGTCCACGCACCCTATGTCCAAACACAAGGTCATTTGGACTGAAACCCGTGCTCTCCTGTGAAACCTCCCTAGCGGCTAACAGTAACCAAGGCAACCCCTCCTCCCAATCCTTATCCATCTCAGTACAATAAGCTCTCAATAAAGACTTTAGAGTTTGATGGAAACGTTCCAGTGCTCCTTGACTTTGCGCGTGATAGGCGCTAGACAAATTGTGTTTAATATGGAGCTGTTGAAGAACCTGACTAAACAGATTAGAGGTGAAATTCGATCCTTGATCACTCTGAATGACCTTAGGGATTCCAAACAATGAGAGAAACTGAGTCAAAGCTTTTAACACAGATTTAGTTGTGATAGATCGGAGAGGATAGGCAGCAGGAAACCTAGTGGTCTGAcacatcacagtgaacaggtaacTGCTACCCTTTTTAGAACGAGGCAGGGGACCCACACAGTCAATAatcagatactcaaaaggttgGCTGAGTACAGGAATAGGAAACAATGGTACCGGTTTAATAGCTTGATTAGGCTTACCAGTTAATTGACAGGTGTGACAAGTTTTTATAAAATCAGAAACATCCCTCTTTAATCTAGGCCAAAAGAAATGTCTTAAAATGCGATTGTAGGTTTTCCTCACCCCCATATGTCCAGCAACGTCGCTGTGGGAAGTTTCCAACACCAAGTCACGAAGCTTAACtggtacaacaacctgactaattgCCTCCCCCAGAAAACAACTATCATGAGACACCCACTTTCTCATCAGGACATCCTCTTGGAGAAAATAGCCATGGGCGACATCTCCCAACTGTTCTACAGGCACAATTTGGTCACGCAACTCTTCTAACGTGGGGTCATCCCGTTGCGCATTAATTAAATCTGAGCGGGTTACAGATAACGGAATAACAGGGAAAACAGTG
>TU328486
CTTCATCCTCTCCTGTGAAGATGATAACTTCTCTTTAGCCATTTCACCAGCGGCATACAGCCGTCTCCGGAAAtcacacacatacgataacagGGACTGAGGAGGCTCGGGAGACTTCCAGTCATCCTGGAGAACAGATAAAAGTCCACGCACCCTATGTCCAAACACAAGGTCATTTGGACTGAAACCCGTGCTCTCCTGTGAAACCTCCCTAGCGGCTAACAGTAACCAAGGCAACCCCTCCTCCCAATCCTTATCCATCTCAGTACAATAAGCTCTCAATAAAGACTTTAGAGTTTGATGGAAACGTTCCAGTGCTCCTTGACTTTGCGCGTGATAGGCGCTAGACAAATTGTGTTTAATATGGAGCTGTTGAAGAACCTGACTAAACAGATTAGAGGTGAAATTCGATCCTTGATCACTCTGAATGACCTTAGGGATTCCAAACAATGAGAGAAACTGAGTCAAAGCTTTTAACACAGATTTAGTTGTGATAGATCGGAGAGGATAGGCAGCAGGAAACCTAGTGGTCTGAcacatcacagtgaacaggtaacTGCTACCCTTTTTAGAACGAGGCAGGGGACCCACACAGTCAATAatcagatactcaaaaggttgGCTGAGTACAGGAATAGGAAACAATGGTACCGGTTTAATAGCTTGATTAGGCTTACCAGTTAATTGACAGGTGTGACAAGTTTTTATAAAATCAGAAACATCCCTCTTTAATCTAGGCCAAAAGAAATGTCTTAAAATGCGATTGTAGGTTTTCCTCACCCCCATATGTCCAGCAACGTCGCTGTGGGAAGTTTCCAACACCAAGTCACGAAGCTTAACtggtacaacaacctgactaattgCCTCCCCCAGAAAACAACTATCATGAGACACCCACTTTCTCATCAGGACATCCTCTTGGAGAAAATAGCCATGGGCGACATCTCCCAACTGTTCTACAGGCACAATTTGGTCACGCAACTCTTCTAACGTGGGGTCATCCCGTTGCGCATTAATTAAATCTGAGCGGGTTACAGATAACGGAATAACAGGGAAAACAGTG

Function

NR:

description
uncharacterized protein LOC110514228

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328483 False 1063 lncRNA 0.45 2 67624211 67631209
TU328485 False 1063 lncRNA 0.45 2 67624211 67631209
TU328486 True 1063 lncRNA 0.45 2 67624211 67631209

Neighbor

gene id symbol gene type direction distance location
LOC110520452 LOC106586638 coding downstream 55513 67545597 ~ 67568698 (-)
LOC110520451 LOC106586637 coding downstream 81882 67524601 ~ 67542329 (-)
LOC110520443 LOC106586629 coding downstream 337251 67275729 ~ 67286960 (-)
LOC110520442 LOC106586628 coding downstream 387966 67224861 ~ 67236245 (-)
LOC110520437 LOC106586625 coding downstream 545563 67066357 ~ 67078648 (-)
LOC110520454 LOC106586643 coding upstream 53841 67685050 ~ 67706221 (-)
LOC118944713 LOC106592868 coding upstream 145202 67776411 ~ 67786849 (-)
LOC110520455 LOC106586642 coding upstream 205496 67836705 ~ 67881418 (-)
LOC110520458 LOC106586647 coding upstream 269147 67900356 ~ 67916858 (-)
nr1i2 nr1i2 coding upstream 494394 68125603 ~ 68147765 (-)
G289421 NA non-coding downstream 32809 67591065 ~ 67591402 (-)
G289394 NA non-coding downstream 79978 67543828 ~ 67544233 (-)
G289382 NA non-coding downstream 104959 67518882 ~ 67519252 (-)
G289378 NA non-coding downstream 111056 67512914 ~ 67513155 (-)
G289371 LOC105911894 non-coding downstream 122082 67501613 ~ 67502129 (-)
G289652 NA non-coding upstream 47653 67678862 ~ 67680167 (-)
G289649 NA non-coding upstream 73825 67705034 ~ 67881378 (-)
G289716 NA non-coding upstream 122091 67753300 ~ 67808257 (-)
G289754 NA non-coding upstream 292723 67923932 ~ 67924167 (-)
G288578 NA other downstream 781330 66842671 ~ 66842881 (-)
G287112 NA other downstream 2043716 65579791 ~ 65580495 (-)
G287042 NA other downstream 2176928 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 2323794 65298207 ~ 65300417 (-)
G286953 LOC107579696 other downstream 2388303 65235180 ~ 65235908 (-)
G289653 LOC106607871 other upstream 252543 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 575381 68206330 ~ 68208674 (-)
G290542 NA other upstream 947894 68579103 ~ 68580707 (-)
G290567 NA other upstream 995123 68626332 ~ 68647620 (-)
G290598 NA other upstream 1079158 68710367 ~ 68717385 (-)

Expression


Co-expression Network