G289652


Basic Information

Item Value
gene id G289652
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67678862 ~ 67680167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU328449
attacttgtgtcatgcacaaagtagatgtcctaaccaacttgccataactatagtttgttcacaagaaatttgtggagtggtttaaaaacgagttttaatgacttgtGGGGACACGAACCCTATGTCTTTGTACTTAGAATCtttatttctaagagtgtatcCTCTTTCTCAAGCAGTAAACAGGAGAAGCACCCATAGtttccctaatggtgcaacaaaCGCTGAAATATAAAGAATACACCACTATATCCAGCATTCCTTAACGGCATAATCACTGGGCTGTGAATACTTTTCAGTGGAACTGGTGAAGCTGAAAAACAGATTTTGGGTGTGTGTGAGACTTAAATCCTGAGATGCATGTACCTCTCATCATGGTGAGCTAAAACCTGTTAAAACTTGATTGCCCATACCTCCAGTACAGTAAATGTGTAGCTACTAATGATGTATATTGCAATTGACCAGATAGAAAACATGAAAGGGTTTATTTAAAGTGTGTTGATCATGTAACATGAGCATTTGGATAAGTTTCACATGACgggctgtgtgtgtttgggttgttCTTTCATgtatagttccacattgatcaTTGGTGACTGTCTACTCTTACATTATGGCCTTTAGATGATGGTTAAAAAAATGATGATGGTTCAAAAAATTATGATCGTACAAAAAATTATGATCGTACAAAAAatgatgatggtacaaaaaatgatgatggtacaaaaaatgatgatggtacaaaaaatgatgatggtacaaaaaattatgatggtacaaaaaattatgatggtacaaaaaaaagaaCAGTTGATTTTTTCTTTGTTTTATCTTTTTTCCAGACCTATTGTTATATTTTACTACATTCCTTTCATATTTCCatgagtgtttcctttcaaatggtaccaagaatatgcatatccttgcttcagggcctgagctataggcagttagatttgggtatgtcattttaggcgaaaatttgaAAAAAGGGGCTAATCCTTAAAAGGTTTTAAGTTCCACCTACTGCTCAGAGACTGTAGAGTCATTGTTATGGGTGTCATATATCTGCCTTGGTatgggtgtgtgagtgtaggtCTATTTACATTCTATATCTGCAGTAGCTGTAACCACCTCGATGTCTCTCTTTCACTCGCtgtctctctcaatgtctctctctatcaaatcaaatatgTCGaatttacaagcatttcgctacacccgcaataacatctggtaaacatttgtatgtgaccaataaaatttgatttgaac
>TU328450
attacttgtgtcatgcacaaagtagatgtcctaaccaacttgccataactatagtttgttcacaagaaatttgtggagtggtttaaaaacgagttttaatgacttgtGGGGACACGAACCCTATGTCTTTGTACTTAGAATCtttatttctaagagtgtatcCTCTTTCTCAAGCAGTAAACAGGAGAAGCACCCATAGtttccctaatggtgcaacaaaCGCTGAAATATAAAGAATACACCACTATATCCAGCATTCCTTAACGGCATAATCACTGGGCTGTGAATACTTTTCAGTGGAACTGGTGAAGCTGAAAAACAGATTTTGGGTGTGTGTGAGACTTAAATCCTGAGATGCATGTACCTCTCATCATGGTGAGCTAAAACCTGTTAAAACTTGATTGCCCATACCTCCAGTACAGTAAATGTGTAGCTACTAATGATGTATATTGCAATTGACCAGATAGAAAACATGAAAGGGTTTATTTAAAGTGTGTTGATCATGTAACATGAGCATTTGGATAAGTTTCACATGACgggctgtgtgtgtttgggttgttCTTTCATgtatagttccacattgatcaTTGGTGACTGTCTACTCTTACATTATGGCCTTTAGATGATGGTTAAAAAAATGATGATGGTTCAAAAAATTATGATCGTACAAAAAATTATGATCGTACAAAAAatgatgatggtacaaaaaatgatgatggtacaaaaaatgatgatggtacaaaaaatgatgatggtacaaaaattatgatggtacaaaaaaaagaaCAGTTGATTTTTTCTTTGTTTTATCTTTTTTCCAGACCTATTGTTATATTTTACTACATTCCTTTCATATTTCCatgagtgtttcctttcaaatggtaccaagaatatgcatatccttgcttcagggcctgagctataggcagttagatttgggtatgtcattttaggcgaaaatttgaAAAAAGGGGCTAATCCTTAAAAGGTTTTAAGTTCCACCTACTGCTCAGAGACTGTAGAGTCATTGTTATGGGTGTCATATATCTGCCTTGGTatgggtgtgtgagtgtaggtCTATTTACATTCTATATCTGCAGTAGCTGTAACCACCTCGATGTCTCTCTTTCACTCGCtgtctctctcaatgtctctctctatcaaatcaaatatgTCGaatttacaagcatttcgctacacccgcaataacatctggtaaacatttgtatgtgaccaataaaatttgatttgaac
>TU328451
attacttgtgtcatgcacaaagtagatgtcctaaccaacttgccataactatagtttgttcacaagaaatttgtggagtggtttaaaaacgagttttaatgacttgtGGGGACACGAACCCTATGTCTTTGTACTTAGAATCtttatttctaagagtgtatcCTCTTTCTCAAGCAGTAAACAGGAGAAGCACCCATAGtttccctaatggtgcaacaaaCGCTGAAATATAAAGAATACACCACTATATCCAGCATTCCTTAACGGCATAATCACTGGGCTGTGAATACTTTTCAGTGGAACTGGTGAAGCTGAAAAACAGATTTTGGGTGTGTGTGAGACTTAAATCCTGAGATGCATGTACCTCTCATCATGGTGAGCTAAAACCTGTTAAAACTTGATTGCCCATACCTCCAGTACAGTAAATGTGTAGCTACTAATGATGTATATTGCAATTGACCAGATAGAAAACATGAAAGGGTTTATTTAAAGTGTGTTGATCATGTAACATGAGCATTTGGATAAGTTTCACATGACgggctgtgtgtgtttgggttgttCTTTCATgtatagttccacattgatcaTTGGTGACTGTCTACTCTTACATTATGGCCTTTAGATGATGGTTAAAAAAATGATGATGGTTCAAAAAATTATGATCGTACAAAAAATTATGATCGTACAAAAAatgatgatggtacaaaaaatgatgatggtacaaaaaatgatgatggtacaaaaaatgatgatggtacaaaaaaaagaaCAGTTGATTTTTTCTTTGTTTTATCTTTTTTCCAGACCTATTGTTATATTTTACTACATTCCTTTCATATTTCCatgagtgtttcctttcaaatggtaccaagaatatgcatatccttgcttcagggcctgagctataggcagttagatttgggtatgtcattttaggcgaaaatttgaAAAAAGGGGCTAATCCTTAAAAGGTTTTAAGTTCCACCTACTGCTCAGAGACTGTAGAGTCATTGTTATGGGTGTCATATATCTGCCTTGGTatgggtgtgtgagtgtaggtCTATTTACATTCTATATCTGCAGTAGCTGTAACCACCTCGATGTCTCTCTTTCACTCGCtgtctctctcaatgtctctctctatcaaatcaaatatgTCGaatttacaagcatttcgctacacccgcaataacatctggtaaacatttgtatgtgaccaataaaatttgatttgaac

Function

NR:

description
PREDICTED: ribonuclease-like 3, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU328449 False 1273 lncRNA 0.36 2 67678862 67680167
TU328450 False 1254 lncRNA 0.36 2 67678862 67680167
TU328451 True 1237 lncRNA 0.36 2 67678862 67680167

Neighbor

gene id symbol gene type direction distance location
LOC110520453 LOC106586647 coding downstream 42204 67617490 ~ 67636658 (-)
LOC110520452 LOC106586638 coding downstream 110164 67545597 ~ 67568698 (-)
LOC110520451 LOC106586637 coding downstream 136533 67524601 ~ 67542329 (-)
LOC110520443 LOC106586629 coding downstream 391902 67275729 ~ 67286960 (-)
LOC110520442 LOC106586628 coding downstream 442617 67224861 ~ 67236245 (-)
LOC110520454 LOC106586643 coding upstream 4883 67685050 ~ 67706221 (-)
LOC118944713 LOC106592868 coding upstream 96244 67776411 ~ 67786849 (-)
LOC110520455 LOC106586642 coding upstream 156538 67836705 ~ 67881418 (-)
LOC110520458 LOC106586647 coding upstream 220189 67900356 ~ 67916858 (-)
nr1i2 nr1i2 coding upstream 445436 68125603 ~ 68147765 (-)
G289677 NA non-coding downstream 47050 67625400 ~ 67631812 (-)
G289676 NA non-coding downstream 47653 67624211 ~ 67631209 (-)
G289674 NA non-coding downstream 50361 67622118 ~ 67628501 (-)
G289421 NA non-coding downstream 87460 67591065 ~ 67591402 (-)
G289394 NA non-coding downstream 134629 67543828 ~ 67544233 (-)
G289649 NA non-coding upstream 24867 67705034 ~ 67881378 (-)
G289716 NA non-coding upstream 73133 67753300 ~ 67808257 (-)
G289754 NA non-coding upstream 243765 67923932 ~ 67924167 (-)
G289757 NA non-coding upstream 249304 67929471 ~ 67929673 (-)
G289678 NA other downstream 45369 67626832 ~ 67633493 (-)
G288578 NA other downstream 835981 66842671 ~ 66842881 (-)
G287112 NA other downstream 2098367 65579791 ~ 65580495 (-)
G287042 NA other downstream 2231579 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 2378445 65298207 ~ 65300417 (-)
G289653 LOC106607871 other upstream 203585 67883752 ~ 67886232 (-)
si:ch211-214p13.7 NA other upstream 526423 68206330 ~ 68208674 (-)
G290542 NA other upstream 898936 68579103 ~ 68580707 (-)
G290567 NA other upstream 946165 68626332 ~ 68647620 (-)
G290598 NA other upstream 1030200 68710367 ~ 68717385 (-)

Expression


Co-expression Network