G289649


Basic Information

Item Value
gene id G289649
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67705034 ~ 67881378 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU328432
GCAGTCGATTCGAAGCGAATAAGCGTTTTCCTACTGGAGCGTTTTCTGGCAGCACAAACGGTGTCGGCTGCTTCAGCAGAAGAACTTACATTCAACAAAGTGACCCTAGCAATGAGAAGAACAAAGCATGTTACGGAAGCTGTGCTGTGTGATTCTACTCATCGTCCAGAGGAATACAGAAAGTACACGGGTCATTGGTGAATGCAGGACTGTGGTACAGGGGGAGGATGTGGACTTATCCTGCAGACTGATAGAGACAACTGAGGACCTCGAACAGATAACATGGCAGAAAAGTACTTGGGAAGAAACACAGAACCA
>TU328437
GTTGACTGGCACAgctgtagcagggcagaaatttgacagacTGACTTGTTAGAAAAGTGGCATCGTACGACGGGGCCACATTGAAAGTcgctaagctcttcagtaaggccattctactgccaatgtttggcggtgtgcttgattttatacacatgtcaccaacgggtgtggctgaaataactgaatccactaatttgaatcggtgtccacatacttttgtatataaagTGTATCATCAGAGAGAGGGGTCCCAAGTCATACAGATGCTGGCCTGTttttctaaaataaaataaataattttgtCCCAtcattcttgtttgtgtgtaatgAGGCCAATGTGTATGTTTCATAACCAGTATAAGGTTATAAGGCTTTCAAGTATGTAGCACACAGTCTATGAAAAGCCAGGAGTCGAGTGGGGTGGAGACTAAACTGTGTCAACCATGTCCACCCTTTGTGCTATAGCTGCTGTGGCTTACTGAGGACATTTCTGTCAGCACAAACCTCAAATAAAACACGTCTCGGCTATTCCAGCAGAGGAACTTCAATTCAAAGCAATGAGAAGAGCAAAGCATGTTACTGAAGCTGAGCTGTGTGATTCTACTCATCATCCAGAGGGATACAGAAAGTACACGGGTCATTGGTGAATGCAGGACTGTGGTACAGGGGGAGGATGTGGACTTATCCTGCAGACTGATAGAGACAACTGAGGACCTCGAACAGATAACATGGCAGAAAAGTACTTGGGAAGAAACACAGAACCA
>TU328439
gtctttttttttttgtacatatttgGACAGATGGATATGTAATCTTCACTTCAACTCTTTTGACAGATAGAGGTAACCTAATTTAACAAATGACACTGAAAGAGTATACTTTGAAATAATTTATTCATCAAAAATCAACAGAAATGCAATTGCAtagtgtataaaaaaaatatgtacaccCCAAGCTTCAATAGCTTGTGTTGCCCTCTTTGGCTGAAATAACTTAATATAGACATTTCTTGTAACTGTGTCAGTCTCTTACATAGACTGGGATACATTTTTGCCCACTCTTCCTTACAGTACTGCTTCAACTGTGTCATGTTCGAGGGCTTTCTTGCATGCATGGCCTGCTTCAAGTTCCCCCCCACAGACCATTTCGataggattgagatctgggctttcACTTGGTCATTCCATAACCCTCCATTTCTTCTTCTTTAGCCATTCTGTTGTAGCTTTGCTTTTGTATCATTGTCATGTTGCAAGATACATGTTCGGTTCAGCTTCAGCTTTTTGACAGATGTTGTCACATTCTCCTCAAGTATGCTCTGGTACAATATAGAATTCATGGTTGACTCAAGTTggccaggccctgaggcagcaaagcagccccaaaaagctgagtcctatatcgatataacctgaaaggctgcaaAGCCATACAGATTCTGGCCTGTTGCTTAGACTGGTTTAGGGGTCCCAAGTCATACAGATTCTGGCCTGTTGCTTAGACTGGTTTAGGGGTCCCAAGTCATACAGATTCTGGCCTGTTGTTGTATTGGAGATGTTTTTTCTTAAATAAAGTAAATGACTTTGTCCCAtcattcttgtttgtttgtaatGAGGCCTATGGGTATGTTTCATAAACTGTAAATGGTGGTACGGGCTTTCAAAGAGGTAGCACACAGCCTATGAAAAGCCAGGAGTCTGTGAGTGGGGTGGAGACTAGACTCTCATTCATGATCCACCCCATTGTGCGATAGGTGCTGTGGCTTACTGAATTAGTGTTTTCCAACAGTAGGAGGACATTTTTCTGTCAGCACAAACATCAAAAACAAATGTCTGCTATTTCAGCAGAGGAACTTCCATTCATCAAAAGCAATGAGAAGAGCAAAGCATGTTACTGAAGCTGAGCTGTGTGATTCTACTCATCATCCAGAGGGATACAGAAAGTACACGGGTCATTGGTGAATGCAGGACTGTGGTACAGGGGGAGGATGTGGACTTATCCTGCAGACTGATAGAGACAACTGAGGACCTCGAACAGATAACATGGCAGAAAAGTACTTGGGAAGAAACACAGAACCA

Function

NR:

description
nectin-3-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328432 False 318 lncRNA 0.47 3 67705034 67881378
TU328437 False 764 lncRNA 0.44 3 67705034 67820036
TU328439 True 1308 lncRNA 0.41 4 67705034 67835185

Neighbor

gene id symbol gene type direction distance location
LOC110520453 LOC106586647 coding downstream 68376 67617490 ~ 67636658 (-)
LOC110520452 LOC106586638 coding downstream 136336 67545597 ~ 67568698 (-)
LOC110520451 LOC106586637 coding downstream 162705 67524601 ~ 67542329 (-)
LOC110520443 LOC106586629 coding downstream 418074 67275729 ~ 67286960 (-)
LOC110520442 LOC106586628 coding downstream 468789 67224861 ~ 67236245 (-)
LOC110520458 LOC106586647 coding upstream 18978 67900356 ~ 67916858 (-)
nr1i2 nr1i2 coding upstream 244225 68125603 ~ 68147765 (-)
si:ch211-214p13.7 NA coding upstream 324952 68206330 ~ 68208674 (-)
LOC110520466 cd200 coding upstream 345894 68227272 ~ 68253241 (-)
LOC110520467 LOC106586653 coding upstream 397194 68278572 ~ 68292750 (-)
G289652 NA non-coding downstream 24867 67678862 ~ 67680167 (-)
G289677 NA non-coding downstream 73222 67625400 ~ 67631812 (-)
G289676 NA non-coding downstream 73825 67624211 ~ 67631209 (-)
G289674 NA non-coding downstream 76533 67622118 ~ 67628501 (-)
G289421 NA non-coding downstream 113632 67591065 ~ 67591402 (-)
G289754 NA non-coding upstream 42554 67923932 ~ 67924167 (-)
G289757 NA non-coding upstream 48093 67929471 ~ 67929673 (-)
G289759 NA non-coding upstream 49965 67931343 ~ 67931791 (-)
G289767 NA non-coding upstream 59398 67940776 ~ 67940975 (-)
G289678 NA other downstream 71541 67626832 ~ 67633493 (-)
G288578 NA other downstream 862153 66842671 ~ 66842881 (-)
G287112 NA other downstream 2124539 65579791 ~ 65580495 (-)
G287042 NA other downstream 2257751 65446825 ~ 65447283 (-)
G286985 LOC106586592 other downstream 2404617 65298207 ~ 65300417 (-)
G289653 LOC106607871 other upstream 2374 67883752 ~ 67886232 (-)
G290542 NA other upstream 697725 68579103 ~ 68580707 (-)
G290567 NA other upstream 744954 68626332 ~ 68647620 (-)
G290598 NA other upstream 828989 68710367 ~ 68717385 (-)

Expression


Co-expression Network