G289544


Basic Information

Item Value
gene id G289544
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67827434 ~ 67836028 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU328314
tttggacagaaagtttctgatttttgcaatgttacgtagatggaaaaaagctgtccttgaaacagtcttgatatgttcgtcaaaagagagatcaggatccagagtaacgccgaggtccttcacagttttatttgttAACTGGGCTatcaacaaatgtagaattactgatgctagcattagACGTGCTCATGGAAACATGGAAGCAGACAACTTCTATCGTCTTCTGGTGCAGATGTAGTATTGCTGGTAGTAGCTCCCAAGAGGCGCAGCAGgctgagacactgcatctcagtgctacaagcgtcactacagacacactggttcgaatccagactttatcacaattggtccagcgtcatcCGAGTTTGGCctgtgtaggctgtcattgtgaatttgttcttaaccgacttgtctagttaaataaagcagcagtactaccagtagagctggtatgtgtctctacaGAGGCAGGCCTTacttttttaaccatttatccaTTTTCGAACTAACGGAATGAGCAGCAAATATATTTGGCTACAAATATTTGAAATTCCTACaagagagtaatggttaatgtgtttgaatgttaattatttgactaggctacctacacttgacattgtgttgttattttgctgaacactagatggctGAATTTTGGGGGAGttcagtgaaacgaggctactcagtcGAGAAAGAAACATCatccaaatgtatagccctgttgaAAATCTAAATGGACTGCtggaaaatgtgaatcacatttttatttttatttggcgtaccctggaggcattgcgcgtaccccagtttgggagtACGCACATGTAGCCAAGCtggctgaccaggtgaaaaacCTGTAGATATGTCCTTGAGCATGGCacctaaccctaatttgctccaggtgCTGACCCTgtaggtaggccgtcattgtaaataacaatttgttcttaactgatttgcctagttaaatgaaggtaaaaaaaaTGGTAGTTTGTGCATGTCAATATTGTCTCAAGAAGGCAAAATGTACTGCCACAGATCATTGCAGATAAAGTTAAGAATTACATCTACAGTACAGACCTGCACCATGATAACGATAACTTTGCAGCTTGTAAAAGTACATATTTCTGTGTTTTTGGAGCCTTTATTACTATTTCCATATCAGCAAGACAAGTTACTTAAAAAAAAGAACAAGTGTCTTCACCCTTCTATAACATGTaaacttacagtggggcaaaaaagtatttagtcagccaccaattatgcaagttctcccaattaaaaagatgagagaggcctgtaattttcatcataggtacacttcaactatgacagacaaaatctacattgtagatttttaatgaatttatttgcaaattatggtggaaaataagtatttggtcacctacaaacaagcaagatttctggctctcacatacctgtaacttcttctttaagaggctcctctgtcctctactcgttatctgtattaatggcacctgtttgaacttgttattagtataaaagacaccaGTACCATAAAAGTACAGGAGCAGCAGCAACAGACATAGAATGACAAAGTGTAGAAAACAACAGGCAGCAGATGTctctgtgaggagagagggaatacaGTTATTATAAGCAATCAGTTAagcaacattgtgtgtgtgtgggggggtgggtgAGATTATATctctgagtatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtcaggtgcaCCTCACTAGAGGCTGTCATTTGTTAAATTAGGTTACCTCTATCTGTCAAAAGAGTTGAAGTGAAGATTACATATCCATCTGTCcaaatatgtacaaaaaaaaaaagacaacttTCCAGGGGTTGTACTTACTTTTTCACATGACTGTACCTCATGAATAGACAATagctcaaaatatatatatatgttttatatgtatatatgtatactgttcaaaagtttggggtcacttagaaatgtccttgtctttgaaagaaaagccatttttttgtccattaaaataacatcaaattgatcagaaatacagtgtagacattattaatgttgtaaatgattattgtagctggaaacagcagtttattttatggaatatctacataggcgtacagaggcccattatcagcaaccatcactcctctgttccaatggcacgttgtgttagcttatccaagtttatcattttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactttgcTGATTATAGGTGAGTACATGATCCAGTCCAAAAACATGTGAGAATGCCAACCAACTATTAATCAACTGTTTACTATCATTCACACCTGTGTCAAGGATTAGAATCTCATTTTCagttttgaaatatccaattctAACATTTAATCCAATCCAATTGCCAAAATTATTTTATTaagcaagtaagttaatgacagcctaggaacagtgggttaactgccttgttctggggcagaatgacagatttttaccttgtcagctcagggattcaatcttgcaaccttttggtttctagtccaacgctctaaccgctaggctacctgccaccctgatCTGATTAGAAAAGTTTTGAAAAACTTGGTCCCGTTGATTACTACCATGCACGCCTGTGTCTCACTCTAGATAACTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU328314 True 2711 lncRNA 0.38 3 67827434 67836028

Neighbor

gene id symbol gene type direction distance location
LOC118936465 LOC106586642 coding upstream 93388 67726893 ~ 67734046 (+)
LOC110504522 LOC106586570 coding upstream 224202 67599901 ~ 67603232 (+)
LOC118964316 NA coding upstream 304717 67521551 ~ 67522717 (+)
LOC110505416 LOC106586647 coding upstream 307272 67519326 ~ 67520162 (+)
LOC110520450 LOC106586636 coding upstream 323210 67461512 ~ 67504224 (+)
LOC110520459 LOC106586086 coding downstream 45388 67881416 ~ 67887339 (+)
LOC110520461 LOC100136473 coding downstream 108850 67944878 ~ 67980956 (+)
lrrc58b LOC106586648 coding downstream 146303 67982331 ~ 67989941 (+)
LOC110520463 LOC106586649 coding downstream 166277 68002305 ~ 68037956 (+)
LOC110504531 LOC106586650 coding downstream 222087 68058115 ~ 68114677 (+)
G289536 NA non-coding upstream 7507 67819485 ~ 67819927 (+)
G289523 NA non-coding upstream 43869 67783144 ~ 67783565 (+)
G289522 NA non-coding upstream 44822 67781933 ~ 67782612 (+)
G289459 NA non-coding upstream 136974 67637045 ~ 67690460 (+)
G289563 LOC106586647 non-coding downstream 64710 67900738 ~ 67916438 (+)
G289572 NA non-coding downstream 83671 67919699 ~ 67919965 (+)
G289574 NA non-coding downstream 88301 67924329 ~ 67924593 (+)
G289578 NA non-coding downstream 91651 67927679 ~ 67927935 (+)
G289517 NA other upstream 65011 67761737 ~ 67762423 (+)
G289486 NA other upstream 145312 67678862 ~ 67682122 (+)
G289455 NA other upstream 195224 67625353 ~ 67632210 (+)
G289116 NA other upstream 348505 67474973 ~ 67478929 (+)
G289883 NA other downstream 387697 68223725 ~ 68225306 (+)
LOC110520478 LOC106586673 other downstream 1790315 69625755 ~ 69635303 (+)
G291327 NA other downstream 1859367 69695395 ~ 69695836 (+)
LOC110520485 dynlt3 other downstream 2026032 69861894 ~ 69870212 (+)
LOC110504602 LOC106586683 other downstream 2083154 69915810 ~ 69923807 (+)

Expression


Co-expression Network