XLOC_022241 (BX649300.1)


Basic Information

Item Value
gene id XLOC_022241
gene name BX649300.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17354153 ~ 17355702 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043902
GTGGCTGACTCCAGCTATTCCTTCGACTCTTGGAGAATGTGCACTGAAAGTCAACAAAATGAATAGTAAAACCAATTTAGTTTTGTATCTCGCTATAGTCACGCACAGCACTTACTTGTAGTTAGCGAATTCGTCTTTCAAGAGGGCCACATAATTGGCAGGGATCAGTCCGGACTCCAGGGACCCCGTCAGCTTCTTGGCGAACACATAATCTCCCCTCTTTTCTATGACTGACAGTTTGTCCCCTTCCTTCACCGACAGCTCTTCCTCACTGCGGGCTACAAAGTCGAACAGAGCCGCGTACAGCTGCGCGGGCTTCTTCTTGGGCGCCGGGACCCGGATATCACCTGAAACGGTACGAATGTCGTCCGGACGATGGAGGTTCGGATAGTTTTCGGGCCATATGCTGTCCCATAACCGCTTCAGGCATGGCATACAGCAGCGACAGCACGTCTCCATCCCAGCGCGCTCTCTCCACGGACTCCAGCGTAGCCAGAATATTTGGCCGCCGTCCACCGAGCGAAACGGGTTGAGAGCAAAATTAAAGAGGCGTGTGGGTCTCTCACCGAGGGTGACCGACTGACTCTGTACCAGGATCGCCTTTGTTGAGCTAAAGCACGGGCTGCTGCGATCATAGCGGAGGATCAGGTGAAACCGGTTCTGCTTCAGGATGGATCAAGGTATGCGGAAAAGACATGCTGGATTGTTCAACGAGACTTGAAGACGATGAGAGGATGGATGTGGTGGTTGGAGAACATGCTCTCTTCATCTGCATCTGTCCATGGCGTCCCTCTTCTGCCCTATAATGAGCGGTGCAGTGCGCCGCAGTGTTTGGTGCCGCTCTTCTCTCCGCTCCGGAGCAAAACGCTTCGCAGTACGTAAACTTGGCGGAGAGCGACGCTTCGCTCCTGTAGTGCGATCATCTGTTCACTGGAAAGCAAGCGCCGCACACTTGAGCTGGCAAAAGCAGCGTGTGTTTATTTTTAGATCCACTCATTAAACGTAGGCTCTGCAATTATTAAAATACACCTCCCTTCTGTAAGAGGAATATTTGCGTGCACATCAGATGCATCAGGGGAATCGTGCAAGAGAGAAATAACACTGTTCGTGTTCACGTTATTATTACTGTACATGACGGGGACTTTCATTGAACGTGCACATATTGGCTCCTTTTAAAACCACTACCCGAAAATAATGGAGGTGACGTCATGCTTGTATTAAACTCCTCTGGAGCTGTTTGTCCCTAAAAGACATTGAAAGCAAAACAGCTATAAGGATGTGTACGATTTTGGAATCATTTTTTATACGAATTTCTTTAAATTTATACGTCCCCTGTAATTAAAACATATAATCTCCATTGATTTGatgtaaaaataatgtaagtactGTATTCCTCAATATTTTGTATGCTATTGTTGTTATACAATAAAACATCTTTGCAGCTGTTTGTTCCTTAGGctacttttgttttaattttatttacttatttagctGTTGTTGTACATATTGCTTTgttcatttaacaaataaaaaatagctgATTTGGGGAA

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0065007 biological regulation biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0043009 chordate embryonic development biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0050789 regulation of biological process biological_process
GO:0050794 regulation of cellular process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0043169 cation binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097013

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043902 True 1550 lncRNA 0.46 1 17354153 17355702

Neighbor

gene id symbol gene type direction distance location
XLOC_022240 BX927275.3 coding downstream 177935 17176104 ~ 17176218 (-)
XLOC_022238 dnmt3bb.1 coding downstream 252793 17011454 ~ 17101360 (-)
XLOC_022239 CR318674.1 coding downstream 307769 17044294 ~ 17046384 (-)
XLOC_022237 NA coding downstream 349370 16961269 ~ 17004783 (-)
XLOC_022236 cdc42l2 coding downstream 393181 16956185 ~ 16960972 (-)
XLOC_022242 ppdpfb coding upstream 72136 17427838 ~ 17429775 (-)
XLOC_022243 tpd52l2b coding upstream 75643 17431345 ~ 17451264 (-)
XLOC_022244 trim101 coding upstream 98989 17454691 ~ 17470146 (-)
XLOC_022245 dnajc5ab coding upstream 117000 17472702 ~ 17509656 (-)
XLOC_022246 bhlhe23 coding upstream 300088 17655790 ~ 17657348 (-)
XLOC_022235 NA non-coding downstream 501206 16850836 ~ 16852947 (-)
XLOC_022233 AL732515.1 non-coding downstream 607730 16744782 ~ 16746423 (-)
XLOC_022247 NA non-coding upstream 302292 17657994 ~ 17839198 (-)
XLOC_022248 CU570795.1 non-coding upstream 327116 17682818 ~ 17682932 (-)
XLOC_022251 NA non-coding upstream 525321 17881023 ~ 17885851 (-)
XLOC_022255 dre-mir-135c-2 non-coding upstream 707471 18063173 ~ 18063299 (-)
XLOC_022256 NA non-coding upstream 718013 18073715 ~ 18074419 (-)

Expression


Co-expression Network