XLOC_022242 (ppdpfb)


Basic Information

Item Value
gene id XLOC_022242
gene name ppdpfb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17427838 ~ 17429775 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043903
ATGTTTTTGTTAGACAGCATTGCAGTAGATATTTCCGGACGTGGAAGGTCTTATCCATCCAAACCTTTTCAAATGGGCCCCGTCGCCTAGCGTTTTCTCCCCAGAGCCTCCGACTGAATCGAGCAGGGTGCTTTAATAACATCGGCACGAGCGGCAAAGAAGGGTTTCCATCTAAGTCACGATTTACACAAGTCTGTAAAATGGCAGCCATCCCAGCTAGTGGTTCTCTTGTTGCCACTCACGACTACTACAGAAGGCGCATCGGCTCTACATCCAGTAGCAGCTCATGTGGCAGTTCGGAGTATAGTGGGGAGGTTATTCCACATCATCCAGGATTGCCCAAACAGGATTCAGGCCATTGGTGGTCCAGTTTCTTCTTTGGGAAGCAGAACCTGCCTGGTATGGGAACTGTTGCAGAGGAGGCTCAGCAGAAGTCAGGGGTGGTGAGTGTGACCAATGGGCAGGTGACATGTGTTGCCCGGGAGATGGTGATGAGGCAGGCGAGTGAAAGCAGTGATGGAGGAAAGTCGGAGGCGGGGAATTCTTGAATCCAACATCAGATCAGGACATCAACGCTAGGGGACGGACATGGctcccttttctttctttcttttctttttttttccccaatccaTGTAATGGGCTGTTTTTAGtacttatttttgtctttttttattcacatAATAAGTGTAAGTAAAAACTTGAAaagatttttgtacatttttacacgTGTAACCGTTTGTTACTTGTTGTCGTCTTATCCTATGTTTTTCAGCACAATAAATGTCTTAAATGGC
>TCONS_00043904
AGACAGCATTGCAGTAGATATTTCCGGACGTGGAAGGTCTTATCCATCCAAACCTTTTCAAATGGGCCCCGTCGCCTAGCGTTTTCTCCCCAGAGCCTCCGACTGAATCGAGCAGGGTGCTTTAATAACATCGGCACGAGCGGCAAAGAAGGGTTTCCATCTAAGTCACGATTTACACAAGTCTGTAAAATGGCAGCCATCCCAGCTAGTGGTTCTCTTGTTGCCACTCACGACTACTACAGAAGTAAGTAGCTTTTGCGAGTGCTTTATTCTGTCAATTTCATACATCTTCTGAATGGTTGATGTTCCTTCTCAGGGCGCATCGGCTCTACATCCAGTAGCAGCTCATGTGGCAGTTCGGAGTATAGTGGGGAGGTTATTCCACATCATCCAGGATTGCCCAAACAGGATTCAGGCCATTGGTGGTCCAGTTTCTTCTTTGGGAAGCAGAACCTGCCTGGTATGGGAACTGTTGCAGAGGAGGCTCAGCAGAAGTGAGTCACTGGATTGAGTTTCAGCCAGTTTTGGTTGCATGTAACATGAAGGCCGTGCCAAGAGCTGGTTTTAAATGTGGATGCagttgcagattttagctttcaCTACCGTAGTCATGCCAATTTGCTAGTATTCTGAGTCCCTTGATCTCATTGGTTCTTTGCAGGTCAGGGGTGGTGAGTGTGACCAATGGGCAGGTGACATGTGTTGCCCGGGAGATGGTGATGAGGCAGGCGAGTGAAAGCAGTGATGGAGGAAAGTCGGAGGCGGGGAATTCTTGAATCCAACATCAGATCAGGACATCAACGCTAGGGGACGGACATGGctcccttttctttctttcttttctttttttttccccaatccaTGTAATGGGCTGTTTTTAGtacttattttt

Function

symbol description
ppdpfb Predicted to act upstream of or within cell differentiation. Is expressed in mucus secreting cell; nervous system; pancreatic system; and pronephric duct. Orthologous to human PPDPF (pancreatic progenitor cell differentiation and proliferation factor).

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0007275 multicellular organism development biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8247 Predicted to act upstream of or within cell differentiation. Is expressed in mucus secreting cell; nervous system; pancreatic system; and pronephric duct. Orthologous to human PPDPF (pancreatic progenitor cell differentiation and proliferation factor).

Ensembl:

ensembl_id ENSDARG00000031317

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043903 False 797 mRNA 0.46 5 17427838 17429775
TCONS_00043904 True 892 lncRNA 0.48 3 17427971 17429764

Neighbor

gene id symbol gene type direction distance location
XLOC_022241 BX649300.1 coding downstream 72136 17354153 ~ 17355702 (-)
XLOC_022240 BX927275.3 coding downstream 251620 17176104 ~ 17176218 (-)
XLOC_022238 dnmt3bb.1 coding downstream 326478 17011454 ~ 17101360 (-)
XLOC_022239 CR318674.1 coding downstream 381454 17044294 ~ 17046384 (-)
XLOC_022237 NA coding downstream 423055 16961269 ~ 17004783 (-)
XLOC_022243 tpd52l2b coding upstream 1570 17431345 ~ 17451264 (-)
XLOC_022244 trim101 coding upstream 24916 17454691 ~ 17470146 (-)
XLOC_022245 dnajc5ab coding upstream 42927 17472702 ~ 17509656 (-)
XLOC_022246 bhlhe23 coding upstream 226015 17655790 ~ 17657348 (-)
XLOC_022247 NA coding upstream 228219 17657994 ~ 17839198 (-)
XLOC_022235 NA non-coding downstream 574891 16850836 ~ 16852947 (-)
XLOC_022248 CU570795.1 non-coding upstream 253043 17682818 ~ 17682932 (-)
XLOC_022251 NA non-coding upstream 451248 17881023 ~ 17885851 (-)
XLOC_022255 dre-mir-135c-2 non-coding upstream 633398 18063173 ~ 18063299 (-)
XLOC_022256 NA non-coding upstream 643940 18073715 ~ 18074419 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location