XLOC_022244 (trim101)


Basic Information

Item Value
gene id XLOC_022244
gene name trim101
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17454691 ~ 17470146 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043915
AGCACATGCGCACATTTCCAGCTGCGCACTAATACAGACCCCCGGAGCGACAGCCCGCTTGCTGCCTTCACAGACTGGAGATCTACAAAGAAGCAGCAGAAACATGAAGGCAGTGGGGTTTCGTGATTGTAATCTACTATTTTAGTTTTCCAGTGAATGTGGGGTCAGCAGGGGCAGCATGTCTCTTCCACTGGATATACGCTCTTACCAGAAAGACCCCTCCTTGGGGACGCTGGAGAAACAGCTCATCTGTCCCATCTGCATGGACGTCTTTACCAAACCTGTGGTCATTCTGCCCTGCCTGCACAACCTCTGCCGCAAGTGTGCCAATGAGCTCTACCAGCCGACTCTCTTCCAGGTTGGAATTGAAGGTAGTTTCCGCTGCCCTTCCTGTCGGCGTGAGGTCGTCTTGGGCCGTCATGGAGTTTTTGGACTGCAACGCAATTTGCTGGTGGAGAACATTATTGATGTTTACAAGCAGGAGTCTGAAAGCTATAGGCCTCCACCGATGCCTCCTGCAGAGTTCAACTGTAAAGAGCATGAAGATGAGAAGCTCAATATTTACTGTATCACGTGTCAGCAGCCGTCCTGCTCTCTCTGTAAGGTGTTTGGGGCACACAAGAACTGCAAAGTAGTTCCTTTGCCAGATATTTACCAGAAGGAGAAGGCTGAACTCAGTGACAGACTTGCATCTTTGGTGTCCACAAATGAGCGTGTTCAATCATTTGTCAATGATCTAGAGGCGCTCAACAGGAACATAGAGGAAAACAGCAGGATCCAGAAACAGATTCTGTGTGAGAAATTTGATCGCATGTCTGCCATTCTGGAGGAAAGGCGTAAGATCATGATGCAACAAATCACTTTTGAGCAGGAAGAAAAGACGGGCTGGACCCAGTCTCTACTGCAAACCTACAATGAGCATTTGGACACAAACTCAAAGTTGATCCAGGCAGCCCAGAGTGCCATAGACGAGCCTGAGATGGCTGCTTTTGTGCAGACCTCAAAGGATCTTACTGAGAAGGTTGGTAAAGCGTCAAAATGCTTCACTCTGGAGACTCTGGATCCTGATTATCAGAACATGGATCACTACAGGGTGGATTTCGATGCAGAGGAGAGAGTCCTGCAGCAGCTGGATTTCATGGAGATTGAACCCGAAGTGGAGGAAACACCCGATGAACCAGATTCTGAAGCAGAGTCTGAAACCGAACCACTACAGACTCCAGAACCAGAATCTGAAGCAGACCAGGATCTAAAGTCAGAGGGTTCTGAGGTGGCAAATCCCACGCCTGAGACAATGGAGGACAGCTGGAGACAAGAAGACAGCTGTGGAGATCTCAAAAAAGTGGCCATGTGTGAGAAGAATGGCTTAAGCACTGCACAGGTTGTAACTCTAGTCCTTTATTTCCTGGCCTTTCTGGTCATCCTACAGCGAATATGGGGACACATCCagtgctttatttttatataaggaCAGCATAAAGACACATTCAGCAGGTCAGAATTATAATTTTCACATGCTGTTTTATATGAAAACGGAGTGAAATATTTCTGTAAAAGTAAAAGTAGAGAAAGAATTAAGAACAGATTAAACTGGTTTATGTTCAAAATCACCTTTCCCAATTTTCTTGAAACGTTCACACATTTGAGCTCTTTCATGATTATGACTGAGCCCTCCAGTGGTCACCGGTGAGACTGCCGGTCTCAAGAACGAGGACCTGCTGTCACTCAGAACAGGTTTCCGCGGGTTCTCTTCTTGATTTGGTTTTTGGAACAAACCTTACTGTGTTTGTGCTGATAATTAAAACATTGTGTCTACTTAA

Function

symbol description
trim101 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in cephalic musculature; myotome; and skeletal muscle.

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-100 Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in protein ubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Is expressed in cephalic musculature; myotome; and skeletal muscle.

Ensembl:

ensembl_id ENSDARG00000018264

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043915 True 1820 mRNA 0.46 9 17454691 17470146

Neighbor

gene id symbol gene type direction distance location
XLOC_022243 tpd52l2b coding downstream 3427 17431345 ~ 17451264 (-)
XLOC_022242 ppdpfb coding downstream 24916 17427838 ~ 17429775 (-)
XLOC_022241 BX649300.1 coding downstream 98989 17354153 ~ 17355702 (-)
XLOC_022240 BX927275.3 coding downstream 278473 17176104 ~ 17176218 (-)
XLOC_022238 dnmt3bb.1 coding downstream 353331 17011454 ~ 17101360 (-)
XLOC_022245 dnajc5ab coding upstream 2556 17472702 ~ 17509656 (-)
XLOC_022246 bhlhe23 coding upstream 185644 17655790 ~ 17657348 (-)
XLOC_022247 NA coding upstream 187848 17657994 ~ 17839198 (-)
XLOC_022248 CU570795.1 coding upstream 212672 17682818 ~ 17682932 (-)
XLOC_022249 CR381647.5 coding upstream 312826 17782972 ~ 17820755 (-)
XLOC_022239 CR318674.1 non-coding downstream 408307 17044294 ~ 17046384 (-)
XLOC_022237 NA non-coding downstream 449908 16961269 ~ 17004783 (-)
XLOC_022235 NA non-coding downstream 601744 16850836 ~ 16852947 (-)
XLOC_022251 NA non-coding upstream 410877 17881023 ~ 17885851 (-)
XLOC_022255 dre-mir-135c-2 non-coding upstream 593027 18063173 ~ 18063299 (-)
XLOC_022256 NA non-coding upstream 603569 18073715 ~ 18074419 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_04746153_04754209 NA coding CI01000001 null 4746133 ~ 4754209 (-)