XLOC_022247


Basic Information

Item Value
gene id XLOC_022247
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 17657994 ~ 17839198 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043919
CACTCGTCACCTAGCAACAACCAAATAAAAGCGCCAGCATTCAGTTGCTTCACGGTTTCTTGCATTAGCCGAGGCGTCCTCACACTCTCGCACACATATAAACGTGTCTTTGCCATCATTATGCAAATATGGACGCAAGATATAACCTCACACCCGAAATGAATACACAAGATGACTACTTTTGGTGTGGAAAATGGTTTGAAGACAGAGGCTCAGAAATGTGCCACCTCTCTCACAATAGCCGGAGAGGCCTATCATTTCACGGTGTGTTAGGAGAGGCTGGAAACGCTCTCTGGCGGGCGTTTGTCCGGAGGGCCTGATATCACACACACGCGGAATGATAACTCTCCGAAAAAAGACAAATCTCCTGCTGATCACACGCTAAAGGGAATAGCCTGGAACAAGGGAGATAAAAGAGAAATCTCCCTATACCTTCACATTTGCTTAATGTTGGCTGTAGCTGCTGAAGCTCAACGCTGGGCCTTATCCAGGCGGTGCGATTAATCCCTCACAGCACGTCATCTCTACCATCACTTCCGCCCTgttcaacaacacacacacacgtcaggtCAGATACAAGTTACAGCATATACCCTGCATGGGCAAAACAAAAAGCATTGTATAAATGTTAAGCCTAGAGAAAATGTTGCCATTTTAGCTCAAAGATTGTAGCTTGCACATTTGATGGAGTATAGTGgcgtcatttttttttcaactccaGAACTTCAGTCAAACATGGTCTTGTTTTAGAGTTCTCttcttttaaagttattttttgtcATAAAGTCTCTGTCTTGTTTTAAATTTCTTGTTTTAATAGTTCTCTATTGCAGTACAATTAAGGACAGTGAATATCAAGCAGGTAGACTTACGTTGTGGTAGCTTTAGTATCCTATATGTTGCAGCTTGCTAGTTTCTTTAGGCCTAAACCCACACCTGAGATTTGACtgttttttgtttatatctcTTCTACTAACCATaggtcttattttttattatttttattatttatttatttattatttatttatttactcaaaggACTAAACCAGAACACAACTTGTTGTCACTACAAATTACATGGTGATAACTTCAGTTTAATCTAGATTACTCATTTGAAGTAATGCACTGATTACTTTAAGATTACTTTTGATATAATTTTATTAGATTGGGATTTGttgtattgttattgttattgagAGGTGCTTTTGTCACCAAATTCATAAGCATGAACTATTACATATTGAAGTCAAGCAATAGGACAC
>TCONS_00043920
CACCGCGTTAATGTTTTCTGCGGGCTCTGCTGCCACCAGAAGGCTCGAAAAAACGGCTGAGGATGGTGTCCgagaaaaaaacattcaaataaatcGCATATCTCTATGGTGTTTTTTTCTCTTGCCGTTAAGCCTGCCTGTGAGAGACTACAGCAAGTTACATGAGATGGAAGTCGGATGGTATGCGACTCATGTCCAACTAACGTcacttaattttaaaacattaacgTTTCTGTAAAAGTTAGTGTTAGAGATGAATGGCACGTGATTTCCGAAAAACAGAGAATATCAAGATGCTCTGTATTACCACAGGAGGGCAGATATTCCTTGAGTGCTTGGACAGACTGCGACACCATCATGCTGACTGCATGCATACTGATAATTCTGCTGCCAAAGCTGGATCCAATCTGCTGAGTCCAAAATCACTGCAGTAAACAGGTCTCGCAGAGAAAGGATGAAGACCTGAGGGGGGGAAGGGAGGAATGAGGTGATGAAAACAGACATCCTCTGAAAGAAATCTCCCTATACCTTCACATTTGCTTAATGTTGGCTGTAGCTGCTGAAGCTCAACGCTGGGCCTTATCCAGGCGGTGCGATTAATCCCTCACAGCACGTCATCTCTACCATCACTTCCGCCCTgttcaacaacacacacacacgtcaggtCAGATACAAGTTACAGCATATACCCTGCATGGGCAAAACAAAAAGCATTGTATAAATGTTAAGCCTAGAGAAAATGTTGCCATTTTAGCTCAAAGATTGTAGCTTGCACATTTGATGGAGTATAGTGgcgtcatttttttttcaactccaGAACTTCAGTCAAACATGGTCTTGTTTTAGAGTTCTCttcttttaaagttattttttgtcATAAAGTCTCTGTCTTGTTTTAAATTTCTTGTTTTAATAGTTCTCTATTGCAGTACAATTAAGGACAGTGAATATCAAGCAGGTAGACTTACGTTGTGGTAGCTTTAGTATCCTATATGTTGCAGCTTGCTAGTTTCTTTAGGCCTAAACCCACACCTGAGATTTGACtgttttttgtttatatctcTTCTACTAACCATaggtcttattttttattatttttattatttatttatttattatttatttatttactcaaaggACTAAACCAGAACACAACTTGTTGTCACTACAAATTACATGGTGATAACTTCAGTTTAATCTAGATTACTCATTTGAAGTAATGCACTGATTACTTTAAGATTACTTTTGATATAATTTTATTAGATTGGGATTTGttgtattgttattgttattgagAGGTGCTTTTGTCACCAAATTCATAAGCATGAACTATTACATATTGAAGTCAAGCAATAGGACAC
>TCONS_00044725
aaaacattcaaataaatcGCATATCTCTATGGTGTTTTTTTCTCTTGCCGTTAAGCCTGCCTGTGAGAGACTACAGCAAGTTACATGAGATGGAAGTCGGATGATGCTCTGTATTACCACAGGAGGGCAGATATTCCTTGAGTGCTTGGACAGACTGCGACACCATCATGCTGACTGCATGCATACTGATAATTCTGCTGCCAAAGCTGGATCCAATCTGCTGAGTCCAAAATCACTGCAGTAAACAGGTCTCGCAGAGAAAGGATGAAGACCTGAGGGGGGGAAGGGAGGAATGAGGTGATGAAAACAGACATCCTCTGAAAGATTTTGCAATGGATTGAGTTTGACCTCTGTGCCACCTCTGACCTCTGATGTCCATGCTGACCATCCTCTAAGGCCCGGTTTCATCAATCAGACACAATGACAGTTTATCTGCCTCAACACAGCCTCCAGCAGAGCAGAAAGTGCACGGTATATTCAGTCAGGGGCTAAATACCAGAAAgattatgctttttgtttttacgTACGCTGTGGATTTTAATCACATGTTCTCTGATTACGGTTTAGCAGAAGATGAAAAACGGTACACCTACAATTTGTAAGAGCAGAAATTACACAGCCGCTGCTTCACTctcatattttattaacatttatagtGCCCTCTACTAATATTggcacctttttttttaaatatgaggTTTTGAAATAAACGTCTTTTTAGTTTTACCTGTTGGTTCTGGTTATAGCTTTTGATGccaaaaaattgtaatattaatatttaaaaaaacattgaatattttttaaaataatttgtttatttcacaACATTTGTCCACTATATTTTACAAa
>TCONS_00044980
AAAACGGCTGAGGATGGTGTCCgagaaaaaaacattcaaataaatcGCATATCTCTATGGTGTTTTTTTCTCTTGCCGTTAAGCCTGCCTGTGAGAGACTACAGCAAGTTACATGAGATGGAAGTCGGATGGTATGCGACTCATGTCCAACTAACGTcacttaattttaaaacattaacgTTTCTGTAAAAGTTAGTGTTAGAGATGAATGGCACGTGATTTCCGAAAAACAGAGAATATCAAGATGCTCTGTATTACCACAGGAGGGCAGATATTCCTTGAGTGCTTGGACAGACTGCGACACCATCATGCTGACTGCATGCATACTGATAATTCTGCTGCCAAAGCTGGATCCAATCTGCTGAGTCCAAAATCACTGCAGTAAACAGGTCTCGCAGAGAAAGGATGAAGACCTGAGGGGGGGAAGGGAGGAATGAGGTGATGAAAACAGACATCCTCTGAAAGATTTTGCAATGGATTGAGTTTGACCTCTGTGCCACCTCTGACCTCTGATGTCCATGCTGACCATCCTCTAAGGCCCGGTTTCATCAATCAGACACAATGACAGTTTATCTGCCTCAACACAGCCTCCAGCAGAGCAGAAAGTGCACGGTATATTCAGTCAGGGGCTAAATACCAGAAAgattatgctttttgtttttacgTACGCTGTGGATTTTAATCACATGTTCTCTGATTACGGTTTAGCAGAAGATGAAAAACGGTACACCTACAATTTGTAAGAGCAGAAATTACACAGCCGCTGCTTCACTctcatattttattaacatttatagtGCCCTCTACTAATATTggcacctttttttttaaatatgaggTTTTGAAATAAACGTCTTTTTAGTTTTACCTGTTGGTTCTGGTTATAGCTTTTGATGccaaaaaattgtaatattaatatttaaaaaaacattgaatattttttaaaataatttgtttatttcacaACATTTGTCCACTATATTTTACAAa

Function

GO:

id name namespace
GO:0031984 organelle subcompartment cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00043919 False 1265 lncRNA 0.38 3 17657994 17663102
TCONS_00043920 False 1361 lncRNA 0.38 4 17657994 17839198
TCONS_00044725 False 849 lncRNA 0.39 4 17684914 17839121
TCONS_00044980 True 990 lncRNA 0.39 4 17684914 17839149

Neighbor

gene id symbol gene type direction distance location
XLOC_022246 bhlhe23 coding downstream 646 17655790 ~ 17657348 (-)
XLOC_022245 dnajc5ab coding downstream 148338 17472702 ~ 17509656 (-)
XLOC_022244 trim101 coding downstream 187848 17454691 ~ 17470146 (-)
XLOC_022243 tpd52l2b coding downstream 206730 17431345 ~ 17451264 (-)
XLOC_022242 ppdpfb coding downstream 228219 17427838 ~ 17429775 (-)
XLOC_022250 tfip11 coding upstream 7842 17847040 ~ 17866100 (-)
XLOC_022251 NA coding upstream 41825 17881023 ~ 17885851 (-)
XLOC_022252 pm20d1.2 coding upstream 154593 17993791 ~ 18017946 (-)
XLOC_022253 pm20d1.1 coding upstream 181730 18020928 ~ 18030399 (-)
XLOC_022254 zgc:92287 coding upstream 193371 18032569 ~ 18057958 (-)
XLOC_022241 BX649300.1 non-coding downstream 302292 17354153 ~ 17355702 (-)
XLOC_022240 BX927275.3 non-coding downstream 481776 17176104 ~ 17176218 (-)
XLOC_022239 CR318674.1 non-coding downstream 611610 17044294 ~ 17046384 (-)
XLOC_022237 NA non-coding downstream 653211 16961269 ~ 17004783 (-)
XLOC_022235 NA non-coding downstream 805047 16850836 ~ 16852947 (-)
XLOC_022255 dre-mir-135c-2 non-coding upstream 223975 18063173 ~ 18063299 (-)
XLOC_022256 NA non-coding upstream 234517 18073715 ~ 18074419 (-)
XLOC_022260 NA non-coding upstream 543099 18382297 ~ 18385168 (-)
XLOC_022261 NA non-coding upstream 547589 18386787 ~ 18415872 (-)

Expression


Co-expression Network