Fish Transcriptome and Expression Database

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model fish

XLOC_022248 (CU570795.1)

Basic Information

Item	Value
gene id	XLOC_022248
gene name	CU570795.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007134.7
NCBI id	CM002907.2
chromosome length	46223584
location	17682818 ~ 17682932 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00043921
gctggcagctagctctctgcaactcttacatggtcgccCAATGAAGCTATGCAGGGCTGTGCCTgctcagtacctggataggagaccacatgagaaacctaggttgctgccggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000113173

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00043921	True	115	rRNA	0.55	1	17682818	17682932

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_022246	bhlhe23	coding	downstream	25470	17655790 ~ 17657348 (-)
XLOC_022245	dnajc5ab	coding	downstream	173162	17472702 ~ 17509656 (-)
XLOC_022244	trim101	coding	downstream	212672	17454691 ~ 17470146 (-)
XLOC_022243	tpd52l2b	coding	downstream	231554	17431345 ~ 17451264 (-)
XLOC_022242	ppdpfb	coding	downstream	253043	17427838 ~ 17429775 (-)
XLOC_022249	CR381647.5	coding	upstream	100040	17782972 ~ 17820755 (-)
XLOC_022250	tfip11	coding	upstream	164108	17847040 ~ 17866100 (-)
XLOC_022251	NA	coding	upstream	198091	17881023 ~ 17885851 (-)
XLOC_022252	pm20d1.2	coding	upstream	310859	17993791 ~ 18017946 (-)
XLOC_022253	pm20d1.1	coding	upstream	337996	18020928 ~ 18030399 (-)
XLOC_022241	BX649300.1	non-coding	downstream	327116	17354153 ~ 17355702 (-)
XLOC_022240	BX927275.3	non-coding	downstream	506600	17176104 ~ 17176218 (-)
XLOC_022239	CR318674.1	non-coding	downstream	636434	17044294 ~ 17046384 (-)
XLOC_022237	NA	non-coding	downstream	678035	16961269 ~ 17004783 (-)
XLOC_022235	NA	non-coding	downstream	829871	16850836 ~ 16852947 (-)
XLOC_022255	dre-mir-135c-2	non-coding	upstream	380241	18063173 ~ 18063299 (-)
XLOC_022256	NA	non-coding	upstream	390783	18073715 ~ 18074419 (-)
XLOC_022260	NA	non-coding	upstream	699365	18382297 ~ 18385168 (-)
XLOC_022261	NA	non-coding	upstream	703855	18386787 ~ 18415872 (-)

Expression

Co-expression Network