G290398


Basic Information

Item Value
gene id G290398
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68715423 ~ 68732910 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU329289
CAcattctccctccacatcctcctcttcaaatcctccctccacatcctcctctccacatcctcctctccacatcctccctccacatcctcctctccacatcatcctcaccacatcctctactccacatcctcctcacagcATCCTCCAtacacatcctcttctccacatcctcctcaccacatcctgcctccacatcctcctctccacatcctccctccagattctccatcaacatcctcctctccacatccccccaccacatcctccctccacatcctccctccacaatctccctccacatcctacctccacatcctcatcaccacatcctcttttccacatcctcctcaccatatcctcatctccacatcctcctctccacatgctcctctccacatcctccctccacATccaccctccacatcctcctcttcacatcctcc
>TU329290
cctccctccacatcctcctctccacatcctccctccacatcctacctccacatcctcatcaccacatcctcttctacacatcctcctcaccacatcctcatctccacatcctcttctccaaatcctcctcaccacatcctcttctccacatcctcaCTCCACATACTCCTCTCCAcaatctccctccacatcctcctctcctcaccctacctccacatcctcttctccacatcctcaCTCCACATACTCCTCTCCAcaatctccctccacatcctcctctcctcaccctaccTCCACAtccccctcaccacatcctcatctccGCATCCTTCTCTCCACATCAtcactccacatcctccctccacatcctcctctccacatcctacctccacatcctcctcaccacatcctcttctccacatcctcctcaccacatcctcctccccACATCCTCCTCTACACATCCTCACTCCAcattctccctccacatcctcctcttcaaatcctccctccacatcctcctctccacatcctcctctccacatcctccctccacatcctcctctccacatcatcctcaccacatcctctactccacatcctcctcacagcATCCTCCAtacacatcctcttctccacatcctcctcaccacatcctgcctccacatcctcctctccacatcctccctccagattctccatcaacatcctcctctccacatccccccaccacatcctccctccacatcctccctccacaatctccctccacatcctacctccacatcctcatcaccacatcctcttttccacatcctcctcaccatatcctcatctccacatcctcctctccacatgctcctctccacatcctccctccacATccaccctccacatcctcctcttcacatcctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU329289 False 444 lncRNA 0.55 2 68715423 68732910
TU329290 True 916 lncRNA 0.55 2 68721854 68732910

Neighbor

gene id symbol gene type direction distance location
LOC110504539 LOC106586655 coding upstream 349941 68324426 ~ 68365482 (+)
LOC118964318 NA coding upstream 378108 68334244 ~ 68337315 (+)
si:ch73-390b10.2 gpr89 coding upstream 437008 68261414 ~ 68278415 (+)
LOC110520465 btla coding upstream 494007 68216285 ~ 68221416 (+)
si:ch211-214p13.9 cd200r1 coding upstream 537650 68173648 ~ 68177773 (+)
LOC110520472 LOC106586659 coding downstream 113598 68846508 ~ 68850315 (+)
LOC110504548 NA coding downstream 121862 68854772 ~ 68858737 (+)
LOC110504559 LOC106586663 coding downstream 209625 68942535 ~ 69172271 (+)
LOC110520475 LOC106586671 coding downstream 736866 69469776 ~ 69595798 (+)
LOC110520478 LOC106586673 coding downstream 892845 69625755 ~ 69635303 (+)
G290373 NA non-coding upstream 27134 68632096 ~ 68688289 (+)
G290376 NA non-coding upstream 40952 68655706 ~ 68674471 (+)
G290382 NA non-coding upstream 67822 68627128 ~ 68647601 (+)
G290345 NA non-coding upstream 134620 68577737 ~ 68580803 (+)
G290337 NA non-coding upstream 149643 68565113 ~ 68565780 (+)
G290669 NA non-coding downstream 78105 68811015 ~ 68811335 (+)
G290666 NA non-coding downstream 82460 68815370 ~ 68815671 (+)
G290675 NA non-coding downstream 83804 68816714 ~ 68817050 (+)
G290678 NA non-coding downstream 85498 68818408 ~ 68818624 (+)
G290710 NA non-coding downstream 118300 68851210 ~ 68853336 (+)
G289883 NA other upstream 490117 68223725 ~ 68225306 (+)
G289517 NA other upstream 953000 67761737 ~ 67762423 (+)
G289486 NA other upstream 1033301 67678862 ~ 67682122 (+)
G289455 NA other upstream 1083213 67625353 ~ 67632210 (+)
LOC110505416 LOC106586647 other upstream 1195453 67519326 ~ 67520162 (+)
G291327 NA other downstream 962485 69695395 ~ 69695836 (+)
LOC110520485 dynlt3 other downstream 1129150 69861894 ~ 69870212 (+)
LOC110504602 LOC106586683 other downstream 1186272 69915810 ~ 69923807 (+)
G291461 NA other downstream 1216757 69949667 ~ 69952168 (+)

Expression


Co-expression Network