G290710


Basic Information

Item Value
gene id G290710
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68851210 ~ 68853336 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU329629
gaggcctcatcttcactgtcacattccaaccttgttgaggatggctcattgtcaggctcaaaaagcctcaaatttgcccgaatggccaccaatttttcaacccttgtattggtcagcctgttgcgtgctttggttttgttcccaaacaaggaccagttgcgctctgaggcggctgatgttggtgggatttggaggcaATGGGAAAGaacctcagatccacaaagtccctcccaccaggtggctgatgagatatgttggcactgCTGCCATAGTGTATCTCCATCCCAAAGACTGTctaacatgatgacaacaccaccccaactggtgttgctgggcagcttcaatgtggtgctcttattcttctcactttgcttggtgaggtagttTGCTGCTATAAcctgatgacccttcacatacttAACCATTTCCTTGGTTTTATTGTAGTGTATCCATTGTTCAGTGCCAcaatgtccttgaggagcagattcaatgcatgagcagcacagccaatgggtgtgatgtgagggtacaactcctctactttagaccaagcagccttcatgttcacagcattgtctgtcaccagtgcaaataccttctggggtccaaggtcattgatgactgtcTTCAGCTCATCtacaatgtagagaccggtgtgtctgttgtcattGTATCTGTGCTATtttagaatactggttgaggggtggagatgatgtagttaattattccatgcccacaaacattcgaccatccatcagagatgattgcaaaacagtctgctttctctatgttttgcttgaccttcacttgaactctgttgaactctgcatccagcaaattagtagataaagtatgtctggttggaggggtgtatgctgggcgaagaacattcagaaatctcttccaatacacattgcctgtgagcatcagaggtgaaccagttgcatacacagctcgagcaagacattcatcagcatttctctgactacgttcctccattgagtcaaacaaacttctgattccaggaggaccatgagctgttgctatcgataaggtgtctgattcatcattttcacctcaaatagagagagggacttttgtcagagtgtgcaaatgtacacagcttttccttctacattagttgcagtgaaatgtctccacacatcagatagtgcccgtgccATTTTCTTGTAAagatgccacaagacctagaattgccttatgtgtatcccacaaaaaaaagtTTCACTGTTAAtagctaacttttttgatgaatttaagcaaagttctccaaattccagggcttaacttcccatggaaaatgtcTGTAAATTCTCTGTTCCGACTCGGTCTCTCTGCAGCATACTACAGTGCAGTTGTACTGTATCAAAGCCATTCTGACACAACAAACAGAGACACTCAGAATCAGCAGACATGTTGGCTCTAGAATCTAACTTCAGACTAAACTGTTTTTATCACAGTGAGCTGATTATTCACtatctacactaccgttcaaaagtttggggtcacttagagatgtccttgtttttgaaagaaaagcacattttttgtctatttaaataacatcaaattgatcagaaatacagtgtagacattgttaacgttgtgaatgactattgtagctggaaacagcagaatttttatggaatatctacataggcgtacagagtctcattatcagcaaccgtcatTCCAATGGCATGTTCTGTTAGTTATTCCAAATGTATAATTTAataaagctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgttctgattaaagaagcaataaaactggccttctttaaactagttgagtatctggagcatcagcatttgtggggttgattacaggctcaaaatgtccagatacaaataactttcttctgaaactcgtcagtctattcttgttctgagaaaagaaggctattccatgtgagaaattgctaagaaactgaagatctcgtacaaagctgtgtcctactcccttcacagaacagcgcgaACAGGCTcttaccagaatagaaagaggagtgggaggccctggtgcacaactgagcaagaggacaagtacattagag

Function

NR:

description
uncharacterized protein LOC106675328

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU329629 True 2127 lncRNA 0.42 1 68851210 68853336

Neighbor

gene id symbol gene type direction distance location
LOC110520472 LOC106586659 coding upstream 895 68846508 ~ 68850315 (+)
LOC110504539 LOC106586655 coding upstream 485728 68324426 ~ 68365482 (+)
LOC118964318 NA coding upstream 513895 68334244 ~ 68337315 (+)
si:ch73-390b10.2 gpr89 coding upstream 572795 68261414 ~ 68278415 (+)
LOC110520465 btla coding upstream 629794 68216285 ~ 68221416 (+)
LOC110504548 NA coding downstream 1436 68854772 ~ 68858737 (+)
LOC110504559 LOC106586663 coding downstream 89199 68942535 ~ 69172271 (+)
LOC110520475 LOC106586671 coding downstream 616440 69469776 ~ 69595798 (+)
LOC110520478 LOC106586673 coding downstream 772419 69625755 ~ 69635303 (+)
LOC110520479 LOC106586674 coding downstream 781244 69634580 ~ 69640723 (+)
G290678 NA non-coding upstream 32586 68818408 ~ 68818624 (+)
G290675 NA non-coding upstream 34160 68816714 ~ 68817050 (+)
G290666 NA non-coding upstream 35539 68815370 ~ 68815671 (+)
G290669 NA non-coding upstream 39875 68811015 ~ 68811335 (+)
G290398 NA non-coding upstream 118300 68715423 ~ 68732910 (+)
G290711 NA non-coding downstream 333 68853669 ~ 68854375 (+)
G290782 NA non-coding downstream 127260 68980596 ~ 68984335 (+)
G290867 NA non-coding downstream 299227 69152563 ~ 69152950 (+)
G289883 NA other upstream 625904 68223725 ~ 68225306 (+)
G289517 NA other upstream 1088787 67761737 ~ 67762423 (+)
G289486 NA other upstream 1169088 67678862 ~ 67682122 (+)
G289455 NA other upstream 1219000 67625353 ~ 67632210 (+)
LOC110505416 LOC106586647 other upstream 1331240 67519326 ~ 67520162 (+)
G291327 NA other downstream 842059 69695395 ~ 69695836 (+)
LOC110520485 dynlt3 other downstream 1008724 69861894 ~ 69870212 (+)
LOC110504602 LOC106586683 other downstream 1065846 69915810 ~ 69923807 (+)
G291461 NA other downstream 1096331 69949667 ~ 69952168 (+)

Expression


Co-expression Network