G290715


Basic Information

Item Value
gene id G290715
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 68853445 ~ 68854358 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU329657
TTGAGTTCAATATAACATTTATTTCACAATAGGATCTGGTCGGACCAGGTCGGTGGCCAGACTCTAGCAGCAACATGTCCCACATGTATCACTCCAACAGCTCTGCTGGGAGTGAGGGCCAATTCAGTCAAGTCAGAAATTGAATTGCAAAATTCCAGAAACGATGGATAGAGGGACTATTCTTTGCAAATTTTGACGGCGAGGAAATAGAACACATTTTCAGTGCGGCCCTCCGGACCTGGTTGAAGACCAACacacgcctcacaagtcctcaactggcagtttcattgaatagtaccagcaaaacaccagtctcaacgtcaacagtgaaaaggcgactccgggatgctggaattctaggcagagttgcaaagaaaaagccatatctcagactggtcaataaaaataaaagattaagatggacagaagaacacagacactggacagaggaactctgcccagaaggccag
>TU329656
CATGTTACTGTACAAAGAACAGAAAATGAGATTGTGTGTTTTTTTCTATTCAGTCTTCTTCTCTAACACATCAACACTAGAGTAGTAAAATGACTGCAGTGGTTGTTTTCCTAAACAGAATGGATGCACAATTTAAGTTCAGTTCATGAGGGTACAGAGCTCTCAACTACAATACCCATAAGCCTCCAGCTCAGAGAACACCCATCATCATCATCgcatgtttagtccttcaataaaTCAGTGTATAAGCATGTTAACATTCTCTCCTGCATATCAACGCCAGCTTTCATTCCATTtctctgtaaggtctactacacctgttgtatttggcgcatgtgacaaatacaatttgatttgatttctgagACTTATAAACAATTGAATATCCTTAGAAAGAATATTTTACACAATGTTAATGCAACATTATGTAGAATAGCAATTGCTTTGAGTTCAATATAACATTTATTTCACAATAGGATCTGGTCGGACCAGGTCGGTGGCCAGACTCTAGCAGCAACATGTCCCACATGTATCACTCCAACAGCTCTGCTGGGAGTGAGGGCCAATTCAGTCAAGTCAGAAATTGAATTGCAAAATTCCAGAAACGATGGATAGAGGGACTATTCTTTGCAAATTTTGACGGCGAGGAAATAGAACACATTTTCAGTGCGGCCCTCCGGACCTGGTTGAAGACCAACacacgcctcacaagtcctcaactggcagt
>TU329658
TTGAGTTCAATATAACATTTATTTCACAATAGGATCTGGTCGGACCAGGTCGGTGGCCAGACTCTAGCAGCAACATGTCCCACATGTATCACTCCAACAGCTCTGCTGGGAGTGAGGGCCAATTCAGTCAAGTCAGAAATTGAATTGCAAAATTCCAGAAACGATGGATAGAGGGACTATTCTTTGCAAATTTTGACGGCGAGGAAATAGAACACATTTTCAGTGCGGCCCTCCGGACCTGGTTGAAGACCAACacacgcctcacaagtcctcaactggcagt
>TU329659
CATGTTACTGTACAAAGAACAGAAAATGAGATTGTGTGTTTTTTTCTATTCAGTCTTCTTCTCTAACACATCAACACTAGAGTAGTAAAATGACTGCAGTGGTTGTTTTCCTAAACAGAATGGATGCACAATTTAAGTTCAGTTCATGAGGGTACAGAGCTCTCAACTACAATACCCATAAGCCTCCAGCTCAGAGAACACCCATCATCATCATCgcatgtttagtccttcaataaaTCAGTGTATAAGCATGTTAACATTCTCTCCTGCATATCAACGCCAGCTTTCATTCCATTtctctgtaaggtctactacacctgttgtatttggcgcatgtgaca

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU329657 False 470 lncRNA 0.46 1 68853445 68853914
TU329656 False 727 lncRNA 0.40 1 68853632 68854358
TU329658 False 283 lncRNA 0.47 1 68853632 68853914
TU329659 True 341 lncRNA 0.39 1 68854018 68854358

Neighbor

gene id symbol gene type direction distance location
LOC110520471 NA coding downstream 266703 68584472 ~ 68586742 (-)
LOC110520470 LOC106586656 coding downstream 392866 68455461 ~ 68460579 (-)
LOC110520467 LOC106586653 coding downstream 560695 68278572 ~ 68292750 (-)
LOC110520466 cd200 coding downstream 600204 68227272 ~ 68253241 (-)
si:ch211-214p13.7 NA coding downstream 644771 68206330 ~ 68208674 (-)
LOC110520474 LOC106586664 coding upstream 406145 69260503 ~ 69277276 (-)
LOC110520476 LOC106586666 coding upstream 526109 69380467 ~ 69469698 (-)
LOC110520477 LOC106586672 coding upstream 741479 69595837 ~ 69614655 (-)
LOC110520480 ube2al coding upstream 786908 69641214 ~ 69644739 (-)
ankrd10b LOC106586677 coding upstream 795179 69649537 ~ 69675010 (-)
G290714 NA non-coding downstream 56 68851878 ~ 68853389 (-)
G290706 NA non-coding downstream 8382 68844786 ~ 68845063 (-)
G290686 NA non-coding downstream 30174 68823052 ~ 68823271 (-)
G290683 NA non-coding downstream 32575 68820595 ~ 68820870 (-)
G290676 NA non-coding downstream 36371 68816037 ~ 68817074 (-)
G290954 NA non-coding upstream 60396 68914754 ~ 68915505 (-)
G291010 NA non-coding upstream 175122 69029480 ~ 69030775 (-)
G291070 LOC106586663 non-coding upstream 274083 69128441 ~ 69128971 (-)
G291087 NA non-coding upstream 298854 69153212 ~ 69153420 (-)
G291093 NA non-coding upstream 305813 69160171 ~ 69160382 (-)
G290713 LOC106586659 other downstream 2591 68846611 ~ 68850854 (-)
G290602 NA other downstream 128531 68721808 ~ 68724914 (-)
G290598 NA other downstream 136060 68710367 ~ 68717385 (-)
G290567 NA other downstream 205825 68626332 ~ 68647620 (-)
G290542 NA other downstream 272738 68579103 ~ 68580707 (-)
G291138 NA other upstream 401647 69256005 ~ 69256544 (-)
G291901 LOC106586687 other upstream 1125988 69980346 ~ 69996605 (-)
G291977 NA other upstream 1253182 70107540 ~ 70107950 (-)
G292753 NA other upstream 1865678 70720036 ~ 70720591 (-)
G292919 NA other upstream 2173261 71027619 ~ 71040152 (-)

Expression


Co-expression Network