Gene
RNA
| Item | Value |
|---|---|
| gene id | G291661 |
| gene name | col4a2 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 69591159 ~ 69594078 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| col4a2 | Predicted to be an extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to be located in extracellular region and membrane. Predicted to be part of collagen trimer. Predicted to be active in basement membrane and extracellular space. Is expressed in eye; head; hypodermis; optic fissure; and optic furrow. Human ortholog(s) of this gene implicated in atherosclerosis and porencephaly. Orthologous to human COL4A2 (collagen type IV alpha 2 chain). |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU330708 | True | 1389 | lncRNA | 0.60 | 8 | 69591159 | 69594078 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110520476 | LOC106586666 | coding | downstream | 121461 | 69380467 ~ 69469698 (-) |
| LOC110520474 | LOC106586664 | coding | downstream | 313883 | 69260503 ~ 69277276 (-) |
| LOC110520471 | NA | coding | downstream | 1004417 | 68584472 ~ 68586742 (-) |
| LOC110520470 | LOC106586656 | coding | downstream | 1130580 | 68455461 ~ 68460579 (-) |
| LOC110520467 | LOC106586653 | coding | downstream | 1298409 | 68278572 ~ 68292750 (-) |
| LOC110520477 | LOC106586672 | coding | upstream | 1759 | 69595837 ~ 69614655 (-) |
| LOC110520480 | ube2al | coding | upstream | 47188 | 69641214 ~ 69644739 (-) |
| ankrd10b | LOC106586677 | coding | upstream | 55459 | 69649537 ~ 69675010 (-) |
| otc | otc | coding | upstream | 104387 | 69698465 ~ 69709169 (-) |
| sytl5 | sytl5 | coding | upstream | 181554 | 69775632 ~ 69861001 (-) |
| G291631 | NA | non-coding | downstream | 83212 | 69499580 ~ 69507947 (-) |
| G291622 | NA | non-coding | downstream | 110215 | 69480509 ~ 69480944 (-) |
| G291604 | NA | non-coding | downstream | 151584 | 69439163 ~ 69439575 (-) |
| G291540 | NA | non-coding | downstream | 211928 | 69377943 ~ 69379231 (-) |
| G291542 | NA | non-coding | downstream | 213401 | 69374577 ~ 69377758 (-) |
| G291662 | LOC106586674 | non-coding | upstream | 45755 | 69639833 ~ 69640694 (-) |
| G291749 | NA | non-coding | upstream | 120152 | 69714230 ~ 69716414 (-) |
| G291755 | NA | non-coding | upstream | 134155 | 69728233 ~ 69729053 (-) |
| G291760 | NA | non-coding | upstream | 139242 | 69733320 ~ 69733532 (-) |
| G291138 | NA | other | downstream | 334615 | 69256005 ~ 69256544 (-) |
| G290713 | LOC106586659 | other | downstream | 740305 | 68846611 ~ 68850854 (-) |
| G290602 | NA | other | downstream | 866245 | 68721808 ~ 68724914 (-) |
| G290598 | NA | other | downstream | 873774 | 68710367 ~ 68717385 (-) |
| G290567 | NA | other | downstream | 943539 | 68626332 ~ 68647620 (-) |
| G291901 | LOC106586687 | other | upstream | 386268 | 69980346 ~ 69996605 (-) |
| G291977 | NA | other | upstream | 513462 | 70107540 ~ 70107950 (-) |
| G292753 | NA | other | upstream | 1125958 | 70720036 ~ 70720591 (-) |
| G292919 | NA | other | upstream | 1433541 | 71027619 ~ 71040152 (-) |
| G293984 | NA | other | upstream | 2309236 | 71903314 ~ 71903908 (-) |
