G291404 (sytl5)


Basic Information

Item Value
gene id G291404
gene name sytl5
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69814140 ~ 69814368 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU330415
TCCCTTTCCTCTTGGCACCATCCACCAGGTTCCTCACGGCACTTCTTCCTGATTTTGGGGTGTCAGGCCTCTCAGGTGAGTCAGCTGGCACTGGGGACTTCCTATGGGGGCTTCCTGCGGGGCTGCTCATGATAGACTGTTTGACCACATCACTGCTGAGCACTGTCCCCTTGTCAAACCGCTTGGACCGCTCCTCTAGGAACCACTCCCCGGTCACCACCTTCAGCTC

Function

symbol description
sytl5 Predicted to enable neurexin family protein binding activity. Predicted to be involved in exocytosis. Predicted to act upstream of or within intracellular protein transport. Predicted to be active in exocytic vesicle and plasma membrane. Orthologous to human SYTL5 (synaptotagmin like 5).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU330415 True 229 lncRNA 0.58 1 69814140 69814368

Neighbor

gene id symbol gene type direction distance location
LOC110504579 LOC106582139 coding upstream 44494 69731759 ~ 69769646 (+)
LOC110504569 rpgr coding upstream 82483 69712348 ~ 69731657 (+)
LOC118964360 NA coding upstream 137477 69676510 ~ 69676663 (+)
LOC110520479 LOC106586674 coding upstream 173417 69634580 ~ 69640723 (+)
LOC110520478 LOC106586673 coding upstream 178837 69625755 ~ 69635303 (+)
LOC110520485 dynlt3 coding downstream 47526 69861894 ~ 69870212 (+)
LOC110504602 LOC106586683 coding downstream 101442 69915810 ~ 69923807 (+)
LOC110520491 LOC106586687 coding downstream 165900 69980268 ~ 70034765 (+)
LOC110520493 LOC106586690 coding downstream 243015 70057383 ~ 70070470 (+)
LOC110520495 LOC106586691 coding downstream 258436 70072804 ~ 70092807 (+)
G291402 NA non-coding upstream 68 69813580 ~ 69814072 (+)
G291401 NA non-coding upstream 903 69812733 ~ 69813237 (+)
G291399 NA non-coding upstream 3503 69810427 ~ 69810637 (+)
G291397 NA non-coding upstream 9511 69804416 ~ 69804629 (+)
G291391 NA non-coding upstream 17036 69796864 ~ 69797104 (+)
G291403 NA non-coding downstream 3210 69817578 ~ 69817977 (+)
G291411 NA non-coding downstream 18382 69832750 ~ 69833055 (+)
G291414 NA non-coding downstream 23343 69837711 ~ 69837925 (+)
G291378 NA non-coding downstream 56488 69870856 ~ 69871336 (+)
G291376 NA non-coding downstream 57325 69871693 ~ 69946132 (+)
G291327 NA other upstream 118304 69695395 ~ 69695836 (+)
G289883 NA other upstream 1588834 68223725 ~ 68225306 (+)
G289517 NA other upstream 2051717 67761737 ~ 67762423 (+)
G289486 NA other upstream 2132018 67678862 ~ 67682122 (+)
G291461 NA other downstream 135299 69949667 ~ 69952168 (+)
LOC110520507 senp7 other downstream 762750 70576887 ~ 70597458 (+)

Expression


Co-expression Network