G293553


Basic Information

Item Value
gene id G293553
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71448166 ~ 71449070 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU332906
gagcaacattcagttggtggtttagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtatagagtaacattcagttggtggtacagagtaacattcagttggtggtatagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtatagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtatagaGTAACATTCCGTTGGTGGTATAGAGCATTAGATTTATTAGATTTGTTTGCCTCTCTGCAGAAGGTGCTGAACCTGACAGAAATAATACATCTGCTTTCCCTTGTATTGATA
>TU332907
gagcaacattcagttggtggtttagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtatagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtatagaGTAACATTCCGTTGGTGGTATAGAGCATTAGATTTATTAGATTTGTTTGCCTCTCTGCAGAAGGTGCTGAACCTGACAGAAATAATACATCTGCTTTCCCTTGTATTGATA
>TU332909
gagcaacattcagttggtggtttagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtatagagtaacattcagttggtggtacagagtaacattcagttggtggtatagagtaacattcagttggtggtatagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtatagagtaacattcagttggtggtacagagtaacattcagttggtggtacagagtaacattcagttggtggtatagaGTAACATTCCGTTGGTGGTATAGAGCATTAGATTTATTAGATTTGTTTGCCTCTCTGCAGAAGGTGCTGAACCTGACAGAAATAATACATCTGCTTTCCCTTGTATTGATA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106592766 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU332906 False 593 lncRNA 0.39 3 71448166 71449070
TU332907 False 401 lncRNA 0.39 2 71448166 71449070
TU332909 True 617 lncRNA 0.39 2 71448166 71449070

Neighbor

gene id symbol gene type direction distance location
cmss1 cmss1 coding downstream 438447 70950681 ~ 71009719 (-)
tmem30c LOC106586702 coding downstream 497567 70945034 ~ 70950599 (-)
LOC118964322 NA coding downstream 540592 70896509 ~ 70907574 (-)
LOC110520512 col8a1 coding downstream 610675 70810604 ~ 70837491 (-)
jagn1a LOC106586704 coding downstream 638117 70807349 ~ 70810049 (-)
LOC118964323 NA coding upstream 223389 71672459 ~ 71676171 (-)
LOC110520517 LOC106586722 coding upstream 259412 71708482 ~ 71716359 (-)
LOC110504652 LOC106586714 coding upstream 305209 71754279 ~ 71764744 (-)
rnaseh2b rnaseh2b coding upstream 324960 71774030 ~ 71785013 (-)
trim13 LOC106586719 coding upstream 483351 71932421 ~ 71937033 (-)
G293528 NA non-coding downstream 68312 71379222 ~ 71379854 (-)
G293518 NA non-coding downstream 86766 71361169 ~ 71361400 (-)
G293514 NA non-coding downstream 91332 71356324 ~ 71356834 (-)
G293511 NA non-coding downstream 98848 71348833 ~ 71349318 (-)
G293502 NA non-coding downstream 127443 71320495 ~ 71320723 (-)
G293555 NA non-coding upstream 5404 71454474 ~ 71455417 (-)
G293570 NA non-coding upstream 34907 71483977 ~ 71484521 (-)
G293583 NA non-coding upstream 54815 71503885 ~ 71504279 (-)
G293596 NA non-coding upstream 76552 71525622 ~ 71525911 (-)
G293600 NA non-coding upstream 81198 71530268 ~ 71530485 (-)
G292919 NA other downstream 408014 71027619 ~ 71040152 (-)
G292753 NA other downstream 727575 70720036 ~ 70720591 (-)
G291977 NA other downstream 1340216 70107540 ~ 70107950 (-)
G291901 LOC106586687 other downstream 1451561 69980346 ~ 69996605 (-)
G291138 NA other downstream 2191622 69256005 ~ 69256544 (-)
G293984 NA other upstream 454244 71903314 ~ 71903908 (-)
LOC110504660 LOC106582021 other upstream 723979 72121974 ~ 72206818 (-)
G294451 NA other upstream 1122179 72571249 ~ 72575432 (-)
G294697 NA other upstream 1326337 72775407 ~ 72776607 (-)
LOC110520539 mfsd9 other upstream 1427269 72870852 ~ 72881264 (-)

Expression


Co-expression Network