G293462 (rnaseh2b)


Basic Information

Item Value
gene id G293462
gene name rnaseh2b
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 71778799 ~ 71785057 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU332798
TGTGAAATGTATGAAACAGTTATAAATTAGGCCCCTGATCTCTACAAGGGGTTTAGTGCCATCCTCTGGTTCATGTTATGTATGCAGGCCAGGGAGAGCATGCCCAGGTATATAGTACTGGACCAGACTGGACCTGGGCTTGACTCACCTTCCTGGGTCTCTGACTCCTGCTTGACTCGGACATACGTTGTGGACTTTACTCCCTCTCCCACTGAGATGTTACTCTTTCTGAGGGTCTTCACTGTCCTCTCAGCCTTTTTCTTTAACCATTCCAtggtcctctcctggctgtagcGCTGAAACTTCTGACTGCCCACCTctttctCCTCAGCCACATGGTGCAGGGAGGCCTGGGAGCGTATGCAGCTCAGCAGCCTGGTGCATGCTGGGAAGTCCTCGTCCATCACTACCTGGTCCACGGGCTGGAACTTCCCCTCTTCACCAGCTTTGATCAAGTAGGGCAACAGTAGGTAGAGGGGATCCATTGGAGTGACATACAGAAGTCTCCCATCTCGCTGTACTGTCTGGCCAATGAACCAGGAGTGGAAGTCCTCGTTGAAGGCTTTGACCTCATACAGCTGCACATCACCACTGCCCAACAGGTACAAAGAAGCTGCATCTGTTGAAGGGTTCCTAAGCCGGATGAAAGTGGGGTCACTGTCATCTTTCTTTGGTGTTTCCACTGCAGAGTCTGCTGCAACAACAACCCATCTGTCGTTTGGTGAATGTGGTGTCCGCTTCTTTTTAGTGGTCATTTTGATctcggctagctagctagttaaaatggcacgcaacaatttaaaagtgtattttttttcaagaagatagttagctagctggttGTTGTCAGTGCAACAAATCAGCGTCTCGTCAGCAGCACAAAAAAGGTACTTCCGTGTCACGGAATTTGGAAAATGTTAAAATAAAAGTCCCCCACGTAATAGTAGAAAAGTCTCAATA

Function

symbol description
rnaseh2b Predicted to be involved in RNA catabolic process and ribonucleotide metabolic process. Predicted to be located in nucleus. Predicted to be part of ribonuclease H2 complex. Predicted to be active in nucleoplasm. Is expressed in several structures, including alar plate midbrain region; blood; immature eye; nervous system; and ventral mesenchyme. Human ortholog(s) of this gene implicated in Aicardi-Goutieres syndrome. Orthologous to human RNASEH2B (ribonuclease H2 subunit B).

NR:

description
ribonuclease H2 subunit B isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU332798 True 960 lncRNA 0.48 7 71778799 71785057

Neighbor

gene id symbol gene type direction distance location
il1rapl1a LOC106586724 coding upstream 72113 71280049 ~ 71706686 (+)
LOC110520513 LOC106586698 coding upstream 776507 70962179 ~ 71002292 (+)
LOC110520514 dcbld2 coding upstream 834149 70909357 ~ 70944650 (+)
LOC110520508 abi3bp coding upstream 1009292 70711131 ~ 70769507 (+)
LOC110504631 LOC106582154 coding upstream 1122918 70612151 ~ 70655881 (+)
LOC118964324 NA coding downstream 22998 71808055 ~ 71810394 (+)
LOC110520521 LOC106586720 coding downstream 143299 71928356 ~ 71944540 (+)
LOC110520522 LOC106586718 coding downstream 162310 71947367 ~ 71975611 (+)
LOC110520528 NA coding downstream 218488 72003545 ~ 72008381 (+)
LOC110504668 LOC106586734 coding downstream 779557 72564614 ~ 72603217 (+)
G293461 NA non-coding upstream 4229 71755659 ~ 71774570 (+)
G293453 NA non-coding upstream 37747 71740847 ~ 71741052 (+)
G293452 NA non-coding upstream 38717 71739527 ~ 71740082 (+)
G293448 NA non-coding upstream 44618 71733914 ~ 71734181 (+)
G293433 LOC106586722 non-coding upstream 67340 71710828 ~ 71711459 (+)
G293474 NA non-coding downstream 5096 71790153 ~ 71790390 (+)
G293475 NA non-coding downstream 7274 71792331 ~ 71792713 (+)
G293783 NA non-coding downstream 50300 71835357 ~ 71835599 (+)
G293809 NA non-coding downstream 70729 71855786 ~ 71856029 (+)
G293450 NA other upstream 40624 71737805 ~ 71738175 (+)
G293204 NA other upstream 412376 71366183 ~ 71366423 (+)
LOC110520507 senp7 other upstream 1197710 70576887 ~ 70597458 (+)
LOC110520493 LOC106586690 other upstream 1708442 70057383 ~ 70070470 (+)
G294147 NA other downstream 463903 72248960 ~ 72249987 (+)
G294162 NA other downstream 505291 72290348 ~ 72292583 (+)
G294772 NA other downstream 1114211 72899268 ~ 72899634 (+)
c3h2orf49 cssa25h2orf49 other downstream 1233778 73018800 ~ 73022950 (+)

Expression


Co-expression Network