Gene
RNA
| Item | Value |
|---|---|
| gene id | G293818 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048567.1 |
| NCBI id | CM023221.2 |
| chromosome length | 85311031 |
| location | 71857263 ~ 71857466 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Retrovirus-related Pol polyprotein LINE-1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU333197 | True | 204 | lncRNA | 0.39 | 1 | 71857263 | 71857466 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| rnaseh2b | rnaseh2b | coding | downstream | 72250 | 71774030 ~ 71785013 (-) |
| LOC110504652 | LOC106586714 | coding | downstream | 92519 | 71754279 ~ 71764744 (-) |
| LOC110520517 | LOC106586722 | coding | downstream | 140904 | 71708482 ~ 71716359 (-) |
| LOC118964323 | NA | coding | downstream | 181092 | 71672459 ~ 71676171 (-) |
| cmss1 | cmss1 | coding | downstream | 847544 | 70950681 ~ 71009719 (-) |
| trim13 | LOC106586719 | coding | upstream | 74955 | 71932421 ~ 71937033 (-) |
| LOC110505427 | LOC106586716 | coding | upstream | 120347 | 71977813 ~ 71979314 (-) |
| LOC110520524 | NA | coding | upstream | 128854 | 71986320 ~ 71996884 (-) |
| LOC110520527 | LOC106586729 | coding | upstream | 139888 | 71997354 ~ 72005789 (-) |
| LOC110520523 | LOC106582019 | coding | upstream | 153229 | 72010695 ~ 72114513 (-) |
| G293755 | NA | non-coding | downstream | 54968 | 71801969 ~ 71802295 (-) |
| G293747 | NA | non-coding | downstream | 71415 | 71785450 ~ 71785848 (-) |
| G293739 | NA | non-coding | downstream | 104940 | 71751912 ~ 71752323 (-) |
| G293738 | NA | non-coding | downstream | 105469 | 71751390 ~ 71751794 (-) |
| G293731 | NA | non-coding | downstream | 117224 | 71739534 ~ 71740039 (-) |
| G293822 | NA | non-coding | upstream | 4005 | 71861471 ~ 71865225 (-) |
| G293828 | NA | non-coding | upstream | 42950 | 71900416 ~ 71900646 (-) |
| G294001 | NA | non-coding | upstream | 48568 | 71906034 ~ 71906494 (-) |
| G294002 | NA | non-coding | upstream | 49575 | 71907041 ~ 71907424 (-) |
| G294006 | NA | non-coding | upstream | 52843 | 71910309 ~ 71910544 (-) |
| G292919 | NA | other | downstream | 817111 | 71027619 ~ 71040152 (-) |
| G292753 | NA | other | downstream | 1136672 | 70720036 ~ 70720591 (-) |
| G291977 | NA | other | downstream | 1749313 | 70107540 ~ 70107950 (-) |
| G291901 | LOC106586687 | other | downstream | 1860658 | 69980346 ~ 69996605 (-) |
| G291138 | NA | other | downstream | 2600719 | 69256005 ~ 69256544 (-) |
| G293984 | NA | other | upstream | 45848 | 71903314 ~ 71903908 (-) |
| LOC110504660 | LOC106582021 | other | upstream | 315583 | 72121974 ~ 72206818 (-) |
| G294451 | NA | other | upstream | 713783 | 72571249 ~ 72575432 (-) |
| G294697 | NA | other | upstream | 917941 | 72775407 ~ 72776607 (-) |
| LOC110520539 | mfsd9 | other | upstream | 1018873 | 72870852 ~ 72881264 (-) |
