G295797 (nck2)



Basic Information


Item Value
gene id G295797
gene name nck2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73068748 ~ 73099306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU335559
CCAGTGTGTCTTTGAGGTTCTTGACCAGAGAGGCCTTCTTCACCAGGCTGTTCTTGCGCTCTACGTAGTTGGAGGGGACGTAGCCGGTCTGGTTTGAGGCGTTCCTCACCCTCCACCAAGTCTTGCTGTCGTCCAGCAGGGTAAGCCGATCATTCTTCCGGATGTCAAGTTCCTGGTCCTGCTGGGCCGTGTAGTCCCACTTGGCTACAACTGTCACCTCCTCCGTCATCTTTCATGGAGTCCccctgTGTTCACTCCAACGAGAACGGGGACTGACGAAGCACACACACTCGAACAAGAACGAAAATAAACCGTTTCCACAAACCAGTCGAGTCGTAAGCAAAATAATTAATTCACGTACTTTCTTTGATTTCTCAAAACAATTCCTTTCACGTAGCTGCCTCCACCTCAATTCACTCGACCTAGTGACGTCACCGCTGCCAAAGCAGGCTTGGGGGTGTTGCG

Function


symbol description
nck2 Enables phosphotyrosine residue binding activity. Involved in several processes, including negative regulation of protein phosphorylation; positive regulation of T cell proliferation; and positive regulation of actin filament polymerization. Located in endoplasmic reticulum.

NR:

description
cytoplasmic protein NCK2-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU335559 True 465 lncRNA 0.52 2 73068748 73099306

Neighbor


gene id symbol gene type direction distance location
fhl2a fhl2 coding downstream 29364 73025288 ~ 73039384 (-)
LOC110520539 mfsd9 coding downstream 187484 72870852 ~ 72881264 (-)
LOC110504714 LOC106586779 coding downstream 230295 72791304 ~ 72838453 (-)
LOC110504707 NA coding downstream 285874 72776716 ~ 72782874 (-)
LOC110520531 LOC106582025 coding downstream 526620 72490848 ~ 72542128 (-)
uxs1 uxs1 coding upstream 63210 73162516 ~ 73266610 (-)
st6gal2a st6gal2 coding upstream 238864 73338170 ~ 73505121 (-)
LOC110505436 LOC106581976 coding upstream 447893 73547199 ~ 73561315 (-)
grk1a grk1 coding upstream 492478 73591784 ~ 73597306 (-)
LOC110520555 LOC106586764 coding upstream 498136 73597442 ~ 73614530 (-)
G295785 NA non-coding downstream 19548 73046614 ~ 73049200 (-)
G295738 NA non-coding downstream 94943 72948008 ~ 72973805 (-)
G295753 NA non-coding downstream 102978 72964648 ~ 72965770 (-)
G295750 NA non-coding downstream 106074 72962307 ~ 72962674 (-)
G294763 NA non-coding downstream 175477 72893018 ~ 72893271 (-)
G295823 NA non-coding upstream 21359 73120665 ~ 73123169 (-)
G295832 NA non-coding upstream 34168 73133474 ~ 73139783 (-)
G295865 NA non-coding upstream 117637 73216943 ~ 73217812 (-)
G295979 NA non-coding upstream 377548 73476854 ~ 73478556 (-)
G296010 NA non-coding upstream 471945 73571251 ~ 73571774 (-)
G294697 NA other downstream 292141 72775407 ~ 72776607 (-)
G294451 NA other downstream 493316 72571249 ~ 72575432 (-)
LOC110504660 LOC106582021 other downstream 861950 72121974 ~ 72206818 (-)
G293984 NA other downstream 1164840 71903314 ~ 71903908 (-)
G296011 NA other upstream 472986 73572292 ~ 73572911 (-)
G296043 NA other upstream 532732 73632038 ~ 73633036 (-)
G296102 LOC106586753 other upstream 673848 73773154 ~ 73775299 (-)
G296100 LOC106586751 other upstream 709176 73808482 ~ 73809596 (-)
LOC110520572 cep97 other upstream 773667 73870489 ~ 73877576 (-)

Expression



Co-expression Network