G295832


Basic Information

Item Value
gene id G295832
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 73133474 ~ 73139783 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU335612
ACTgatctattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACTGATCcattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACTGATCcattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACTGATCcattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACTgatctattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACTgatctattaccggtgtgatcatataaCCCACCTCAAATGTAATTGGTCCAAACAACAACGCATTGAGTTTTCATGCaaagccaatatgctgtgataatagTATTGGGCCTATAGGTTATTGCACAAACTTCATTGCCAGTACTGTTTTTAATAGCTTAAATGTTGCATAGGATGATTAGattttttaagtcatgttaaaTCTGAACGGTAGAACCctgcttgcattttgactcagaaagtgatcctgactcagaaaaggttggtgaccactgatgtACATGATCCTAAAACGCATTGTGATCAGATTTTCCTGCCCACCTCCGGACGTAGTCAGGCACGCATTGCGTCTGGATATCTCACAAGTGTAAACGGATCTGGACAGTGAAACCATTTAATTCATAATTATCCCGCATTGTAATATAATTAACAGGTGGTAACATGGATGTATGACATCAATATATggcataaaataaataaatatattttattttgaaaGAATATTCGTCAAATAATTTACATACAAGGAGGCACCAGGAAATCTGGTCACAAAGTGGACACAGTGGACATGAGTGCGttcgtcaacgtgtgtgtgttttggagaaGCAAACAGCAGCTCCTTGTCTTGCCCAAGCTGGACAGGGACACACTGGCACAGGGCTAAAGCAGAGAAGTGCTAGAGTGTGAAGAAGGGGGAaggtgggggaggagacagagagacgagagacaAAGCAAGCGggacagatagggagagagaaaatacagGGACTCAAAGAAAGCGAGAAAAAGAGACTGTAAGGAAGAGAGGGAATagacagagggcagagagggaggaaggaatgtcAGAGAGGAGAAATGGATGACCCATGAGACTTCAGACTCATGTTACAGTCTTTGTCGTTTCCTCTTCAGTAGCAGCTTAAGCGCCCCCACCTCTCTTTACAACACTGAGCCAGACATAAACCCATCATACACTCTGCCTGACTGAAGCCTACAGTAGCTGCATTCCTTCACCAGGCACTCCTTGTTCCCCcatacacacaaactcacagcaATTAGTCCACAAAAGAAGGATGTGCAATCAGAGGTTTGAGACCATTCCCCCTGCTGTTCTGTTTCTTTCTGCTGGCTTACCGACCTCCTTCGTAGCAGCCCCCTTACCATGCAGATCAACCTGGTCTCATAGaatagatgtaacatagtaaatgtaaatctggcaCACTCAAATTAGCATGATATGTttagtttggtatggttacataagacagatgtttacttaaggcaaaaacaaaagtagggtgATTGGTTGGGGCGGATGGGTTGGCGTATAACGCGAACTTCTAACAACCAAAAAGGTTTAACCCTGACACCTAACccttagcctagctaatgttGCCACCTAGCTAGTATTCATAACATACCATAAGTTTAGCAAATTTGTAATATCATACGAAATGTGATGggcatccacaaatgaatacatactatACAAAACGTAGGATAtaatactaaatggagtgtctcggatttacatacagagtattacgaaatgctctgagaccaggttgtgcAGATAGAAGGCTCCAGGAGGTTTtctacagctccagtagaacagcAAAGCGCAGGGGATTTCTGGACACAGCAGTTTACTCTCCAGGAGAAAGAGCATTCTGCTCCGTAAGTACACTGCACCATGAAATGAGATTCAGTGTTGTGGCAGATGAGCCATGAGCAGAGAGGATTCTTGCTGTGGTACCGTATCACAAGAGTGTTGATTAGTAATCCTCTGATGAGGGGCTCTGTTGTATGTATGAACGGAGGTCGAATAGGGCCCATTCCAGTAACACTCACTGAGCACCACTTCTTTACTTGAACTACTGATCTATCTAATGGAGCCCTGGTCCAAGGCTGGATAAAGGTGGCAGTTTTATTTCAGTTTTCCGTTCCTCTCAGAAGCTACAGATGTCTCGTAGAACgaggacagccccccccccctcttctgtcCACCACCATTGCTCTCTGTCCAACTCAATCAACACTGTGCAGTCTTAATCAAAATTGTTGATCAAAGCCACTCAAGATCAAGATCAAGTCAGGTTTCTGATGCAAGAATCTGAATGTATGAGAATCAAACTGTTGAAAGATAATAACTTTGTAAGCTTTCCTGCTTTGACTAGATGACAAAGAAAAGCGCAATAAGCCATCAATTTGTTCAAAGGAGATTTATAGCATtaactgtgtgtgcatgcatgcctgTCTGCTACTAAATATGTTCAGGGTATAGTTTGATCAATGCAATATTCAGACAATAGTTAAAAGGCAGTGATTTTAAAACTTCTCCAAAGATTTAATTTGACCCAAACTTCATTCCGGTACCCCCTTAGATTCTTCTGTGTCTTCGTCGGGGCTGTCGTAACCTAGATAACTGGCAATAGGGAAGTGGGCCCAGTAGGTTCTGGCCAGGTCCTGGATCCGGTCGTAACCAGCCTGGGCAGTCAGCTCCTGCAACCAGCCTGTGAAGTCGGACGACCACAGGGCCCAGTTGGGCATTTCACGTTTTTCCCTGCCTTGCCTTCCTTTGTGGCAGTCTCTGTCTCTTCTGCTCCTGGATAAGACACAGTGAAGGGAAACGGAAAGAGTCAGACCTAAAGTCTAGTACTTTAGGACAGTATGGGTGACCGATCAGATCCTTTGTCAATAACTGGCCAAAAGATCAGAACTGGGTTGCCTGTGAAAAACACAGCCTATGAGTGGTACACTCAAAGGTGTTCACCTACCTGTGAAACTGAGGAATCCCAGGAGTATGAAGCAGACCAACATTGAGACACGCAGGCGATGCATGCTGTCAGACAAGGCTAtccagagatagacagagggacacagaaaCACTATTCAGTCGAACTGAATAGGCAGAGAGGCCAAGAGACACCGAAAAAACACATGCAGGCAGATACAGTAGCAAGAAAAAATGCTCAGTTTACCTTGAACTATCAAGGACTAATTTCCTCAAACCACCCAGAGAAAATAGAAACTGGAAGAAAGTTAAAGGCAGAAATAAATACAAagggaaaatacctgtctattgtGCTTCCAATGTTGTTACCAAGCCAACAAGTGCTCGAGGGCTAGATTCAGTCTGTAGCGCAGAAGATCCACGTTGTTGCGCAATTTAAGTGGAAAGGTAATTTCCCattgagctgacatatgcagcgtttaccgtgaatgcgggaacattgccttcaGGAATGGCCTTTTCCTCGTTATTCAGATTACAGCCTCTCGCttttggttatttgaaaatgaaatctccaaaatatcactttttttaaaacaagccatagaaaatTGGTTGCGATTTCAGTTCAATCCGCCAGAAAAGAgagaacaaatattatggttcaactcaaatatactaattgattaaaaaaactattttttggggagaaaaacaaacaaattatatattctttgtaaatgatatcataaacAAGACTGGTGGAGTTAtatcacacatgcagctaacaaaaatatatggaagtgtctgctctatccaaaattacaaccaactgattgcagcattaccacaaaaatagAAGAAGGAATTGGAAGGCGGAGAAACTAAGACAGGTGtcatttatactgataacaagttcaaacaggtgccaatacaggtaacgagtggaggacagaggagcctcttaaagaagaagttacaggtctgtgagagccagaaatcattCTTGTTtgcaggtgaccaaatacttattttccaccataatttgcaaataaattcataaaaaatcctacaatgtgattttctggattttctttctcattttgtctgtcatagttatgatgaaaattgcaggcctctctcatctttttaagtgggagaacttgcacaattgggggctgactaaatacttttttgcccaactgTATATTGGGGACACAACCATCCCAGCTAtgcagattttgctgcaaagagactcattagatcatttgttttggtactgtccatatgtagctgtttttggtcgcaggttcaggaatggctgaagaattgcaacatttacctggagttaACTCTGCAAATCGCACTGCTGGGTGATcggaaaagtcatagtcaatcgatcaatagtataataatactcttagttAAAATGttcatctttaatttacaatttgtagaaactatgagaatagaaaggttcagaacttttgtgaaacatcacagcacaattgaaaaatagATGGAAGGTCTTcatagatagatgggaggggttgagggtagcagaaggctgggactggaaggtctttagagacagatgggaggggttaagggtagcagaaggatgggactggatggtctttagagatagatgggaggggttaagGGTAGCAGAAGGATGGCACTAAAAACAAACAATAACTAATGTCAAATgcactgtgtctgtaaaatgtatatagtatgaaTAAGCTGGAAGTAAAAGCCTAAGTGCtgttgttcattagtttactccaattaggggagggaaaattaataaaggaaaatatatttcaaaacaatatatatatatttaaaataacatatatatttctaaaaaatatacatatatggGGGATTGTAAAAGATGCAGACAATCACATTcatagaagccacaatctatttgcaatattaaagctgatccaccccctaaaaaatatatttaaaaaattatacAAACATGGAGTATCCACAAAtgcaggaacattgcctttaaatctaAATTGCGCTACAGCGTAGATCTTCTACGCTACGGATTGAATCTAAGCCCTAGTCTAGAGTACACTACCTAACCAACCAATgtagagaaaaatacatttgtaCTAGAAATATGAAATATCAGGGAGAAAACCTTACCTGATTGAGATGACTGAGCCAAGGACTTTGTCCGTATTTGACCACAGTAAACTACAGCTACCTTCTCCTCTTTGATTGTACAGTAGTCTGCACCCGTTGAACGGTCTCTGTCCTGTGCTCTGGGGTTTCTGTCCATCCTCaggtgaggaggagacagaaaAAGGGCAGACATATTTGTTTTTCACACTTCCTCTCTGTATGTCTGACCTCCACCACAACATACTTCACTGGATCTCTCACACACCttacacacccgcacacacagtgATCTATGATACAAACTCTTTATTACCTGACTCTAGGCATAATGCTGACAACACTGCATTTGCAACGTTAGTAGACTACAGCATCAACCATGCATTACTATTAATGCTGACCAAACTGTGGTTTACCGTCAAGGAAATCTATCGTGAAGAATAAACATTTGGCACTGAGCATCAAATACAGTGTACCACCTCGGGGTTAAACATATCTGTTTGGAAAGAAcaggaagggagatggagagagggagaaaaatggGATCAAAATATAGACAGGCGGAAAAGGCAGCCAGGGGGGAAATAGAgacagacatgagagagagagagagagctgtgagagaCCAGTACACAGCCAGTCCAGAA

Function

NR:

description
otospiralin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU335612 True 5826 lncRNA 0.41 2 73133474 73139783

Neighbor

gene id symbol gene type direction distance location
fhl2a fhl2 coding downstream 94090 73025288 ~ 73039384 (-)
LOC110520539 mfsd9 coding downstream 252210 72870852 ~ 72881264 (-)
LOC110504714 LOC106586779 coding downstream 295021 72791304 ~ 72838453 (-)
LOC110504707 NA coding downstream 350600 72776716 ~ 72782874 (-)
LOC110520531 LOC106582025 coding downstream 591346 72490848 ~ 72542128 (-)
uxs1 uxs1 coding upstream 22733 73162516 ~ 73266610 (-)
st6gal2a st6gal2 coding upstream 198387 73338170 ~ 73505121 (-)
LOC110505436 LOC106581976 coding upstream 407416 73547199 ~ 73561315 (-)
grk1a grk1 coding upstream 452001 73591784 ~ 73597306 (-)
LOC110520555 LOC106586764 coding upstream 457659 73597442 ~ 73614530 (-)
G295823 NA non-coding downstream 10305 73120665 ~ 73123169 (-)
G295797 nck2 non-coding downstream 34168 73068748 ~ 73099306 (-)
G295785 NA non-coding downstream 84274 73046614 ~ 73049200 (-)
G295738 NA non-coding downstream 159669 72948008 ~ 72973805 (-)
G295865 NA non-coding upstream 77160 73216943 ~ 73217812 (-)
G295979 NA non-coding upstream 337071 73476854 ~ 73478556 (-)
G296010 NA non-coding upstream 431468 73571251 ~ 73571774 (-)
G296012 NA non-coding upstream 433867 73573650 ~ 73573923 (-)
G296039 NA non-coding upstream 488256 73628039 ~ 73628383 (-)
G294697 NA other downstream 356867 72775407 ~ 72776607 (-)
G294451 NA other downstream 558042 72571249 ~ 72575432 (-)
LOC110504660 LOC106582021 other downstream 926676 72121974 ~ 72206818 (-)
G293984 NA other downstream 1229566 71903314 ~ 71903908 (-)
G296011 NA other upstream 432509 73572292 ~ 73572911 (-)
G296043 NA other upstream 492255 73632038 ~ 73633036 (-)
G296102 LOC106586753 other upstream 633371 73773154 ~ 73775299 (-)
G296100 LOC106586751 other upstream 668699 73808482 ~ 73809596 (-)
LOC110520572 cep97 other upstream 733190 73870489 ~ 73877576 (-)

Expression


Co-expression Network