G300125


Basic Information

Item Value
gene id G300125
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 77829007 ~ 77869324 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU340460
gtcaaagtccagacctagtCCCAAATGAGATGTTGTAGCAGGACTTGAAATGAGCAGttcatgttaaaaaaaaacacaaatgtcgctgagttaaagcagtgcTGTATGGAAGAGTGGGACAGAATTTCTCCACAGCGACGTGAGAGActaatcaacaactacaggaagcatttggttgcagtcgttgaattaaaaaaaaatatatatttttaCTTCTGTTTAACTAgacaagtgagttaagaacaaaatcttattttcaatgacggcctaggaacagtgggttaactgccttgttcgggggtagaatgacagatttttttaccttgtctgctcagggattcgatcttgctaTCTTTCGTTTtaatagtccaacgctctaaccactaggctacctagagAAATTCATGGTGAATAGtgtattgtcattttggagtcacttttattgtaaatcaACACTGCTacgttaatgtggatgctaccatgattacgcataatcatgaataatgatgagtgaggaaAGCTAAGGGCATAAATGTCATACCCCAccaaaaaaatgctaacctcttgTTACTGGTAATGGTAAGAAGTTAGCATGTGTTGGGGGCATGATCTTTGTGAGTCTGTAGATACATGAAGTGCATTCAATTTCTAAActgtaaaacagatatgtatgaaaatagcCTCAAATAAAAGGAGACTTTCTGTACTGTCACTGTCAAATTAAACATTTTAGTGTCACTGTCCAAGTAAATACATAGGGCTATAGGGAAAGTAGGCAACGGAAGCTAAACTACAGTAGAGTGGCATAGTAATATGTTACATTGACAATTGCAGTTGGGATTGAAATTCAGAAATATACTTGATTTGCAGTACCCTCATTTTCTGCAAACAAGTCCAGTTTTGCAAGTGTGtcattttaaaaaaacaaacatttatagtAGTTCTGTAGATGTCACTCTCTTTTCAAGTGCACAATTCAGTATACTACGCTTATCGCAACGGTCACAAGGAACTGAAATAGACATTATGGTACTTAGGCAGACAGATCcacaacacagagatacagtacagatGCAATCACagtctaaaaaaaaaacatggctatGTTGCATGCATTTAATATTTCAtttatgtacatatacatatTGCATTAGAGGCAGAGAGCAGTAGGGATCCTCTGATCTCATTGGTCCTCAGCTTGAGAAGGACTGGAGTTCTGTGGCTGATCTAGGGATAgcgttttattattattattattattattataaaattattataattattttttgtGTTTTCCAAATGCGCCATCTAATATTATTGCATAAAGTTCAGGGCCTTTTATTGTTGGGAAAACCTGCActgatgtactgtatatttccAATCTTATGCTTCTATTTTCTGTCATTCAGGAAAAACTGACATGAGATTTAGATCCCCACAGAGTGTTTCTGGCTCAGGGTCAGGTGGCTCTCagctgcactctctctctctctctctcacatctctgctgttttttctgtgtgtttttaaaaaaaaatctactgtTGACTTTTCTCTGTTTGCCTTAGAGCTTTTCTATTTTGGAATAAATGATGCTTAACCTCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU340460 True 1605 lncRNA 0.37 2 77829007 77869324

Neighbor

gene id symbol gene type direction distance location
LOC110520621 LOC106586835 coding downstream 252003 77573159 ~ 77577004 (-)
LOC118944720 LOC106581911 coding downstream 259815 77567356 ~ 77569192 (-)
LOC110520620 LOC106586837 coding downstream 290646 77526470 ~ 77538361 (-)
LOC110520616 LOC106586811 coding downstream 583587 77174734 ~ 77245420 (-)
tlr7 LOC106586812 coding downstream 655770 77164642 ~ 77173237 (-)
LOC110520629 pde9a coding upstream 4464 77873788 ~ 77933327 (-)
LOC110520630 slc37a1 coding upstream 64752 77934076 ~ 77964066 (-)
LOC110520634 LOC106580607 coding upstream 203267 78072591 ~ 78076780 (-)
ifngr2a ifngr2 coding upstream 215376 78084700 ~ 78096638 (-)
LOC110520635 LOC101867533 coding upstream 243514 78112838 ~ 78138524 (-)
G300073 NA non-coding downstream 51746 77725339 ~ 77777261 (-)
G300070 NA non-coding downstream 148522 77679608 ~ 77680485 (-)
G299890 NA non-coding downstream 163774 77664529 ~ 77665233 (-)
G299847 NA non-coding downstream 197015 77631705 ~ 77631992 (-)
G299821 NA non-coding downstream 214191 77614534 ~ 77614816 (-)
G300179 NA non-coding upstream 9795 77879119 ~ 77880078 (-)
G300190 NA non-coding upstream 36488 77905812 ~ 77911851 (-)
G300213 NA non-coding upstream 97128 77966452 ~ 77966723 (-)
G300230 NA non-coding upstream 128353 77997677 ~ 77998710 (-)
G300237 NA non-coding upstream 144848 78014172 ~ 78014644 (-)
G299024 NA other downstream 1041276 76782843 ~ 76787731 (-)
G298192 NA other downstream 1662606 76166003 ~ 76166401 (-)
G298131 NA other downstream 1772001 76055121 ~ 76057006 (-)
G298065 NA other downstream 1865933 75960547 ~ 75963074 (-)
G296315 NA other downstream 3589212 74239187 ~ 74239795 (-)
G300200 NA other upstream 59162 77928486 ~ 77983204 (-)
G300251 NA other upstream 165161 78034485 ~ 78035018 (-)
G300470 NA other upstream 424459 78293783 ~ 78294220 (-)
G301283 NA other upstream 1234025 79103349 ~ 79290938 (-)
G301282 NA other upstream 1352774 79222098 ~ 79223310 (-)

Expression


Co-expression Network