G300677


Basic Information

Item Value
gene id G300677
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 78525626 ~ 78527658 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU341120
CAGACTGGTGGAATGTGTGTCACTGTAGTTAATTTAGTTCTTGAATGTTTAACCATTTCAACGGCCTGGTCATCTGAAACTGCAAGGGGAGGGGTTACTGATACAGCCACCTGGAAACCAGGACAGACTAACGAAACCAGGACAGACTAACGAAACCAGGACAGACTAACGAAACCAGGACAGACTAACGAAACCAGGACAGACTAACGAAACCAGGACAGACTAACGAAACCAGGACAGACTAACGAAACCAGGACAGGGAGACAAATGAACAACCCAATCGTAATACTGTGTCACTTACTGAAcagaaatcaaataaaaaaaaacagaacaacaacaaaaatgaattCAATAAATATTTATGGTACACAGGAATATGCAGCAGTCGGTTTGGCAACTTGTTCTCTCGATTGTTTCCAAACCAAATTGCCATGGAAACAGTGCAAaagggggagggagtgggaggaggaCAAGGGCTTTCCAACGAGCGCTAGCTAAAATAcatagcaaaaaaaataaaaataataattctaaTTGTATACAAAACATCTTACTTTAAgagttgataaaaaaaaacattgttttattgATCTTGTCAATATGTACACAAGCTATTTACCAACAAACATATGCTCTGTTTTACAGAAGAGTGTCCCATTTGCTCTTTATTCATTTCCATGTACTTTCCTAAAAAGGTGAATAAGGCTATTGTAACATCCCAGGATCCATAAACAATACAAACATTCATGTATTTACAGTTTCTCACCTACAGATAGAACGGTGCAAAATTACTGAGTCAGGTGACCAAGGGCTGACCAATACGAGCAAGGCATTTTACAGTTAGCCTGAAGTACTTCTCCTAGCCAGCTTACTAACATTCTCTCAACATGGCTTGCAACATTTCATTGACATAACAGGGACATAAAAATCGACCCTAGCCGTTTTAGAAGAATGTCAGTTGTACGTTAGCTAGGATAAGGACGTCAGATTCAAAGAAACTAAAACGATTGTCATATTCTGTCGCAGTCAGACAGCAACTAAACATCAATTTGTTTTGTGATTCctggtgtgtgttttttttttttctctctctctctctctctcttactttttcTTAAATAACTATCCGGgtgcatttcattttcaaaacgtttttctttttttcttcacaGTTTACCTTGGAACGaaataaatgttaaaataatacTAGAAATCAAAAAACTCTTAACAGCAGGCTCGTGTGATGTACTTTACTCGTTTTGTTGTTGTCCTGTTTGTTGTTACATCTCTCAGTGGTGTAAGAACACTTTCCATAAGTGTAGATTTCTCTCAattcttaaaaaaataaatagaaattgCATATTTGCAGATTTTGTAGCCTCTTAGAGGCAGAAACCCCAGATCATACAAGGCTTGGTGAAATTTGATGTTCTTAATGAACTAATGAGAATGTTGGTTGTGAACAGATACATGATTTGGGCGTGGTATAAGTCACACTCGTGTTCTCATTTTCTTAAGTCAATGTTTTCAAATGCGTGTGAATAAAGAGAACAAAATGGCTGTCTTTCACTGGCCTTGCTCAAcaggaggcacacacacacacacacacacggtagcaTAGGGAAAGAGGGGCACAGGGTCATCATGAGAATCTTCCCATGGTCCTTTGGGAGATGCTACAGTGAAGGAGTGTGGGATACACTGCTGGTCTGCCTCGTGGTTATGCTATTTTGGGTCCAACAACCTCCTCTCCCCTTGGGGCATATGTCCAGGCTGCCCTCCCTATCCCCTTCCCAGGCTCTAGTCCTGTGTCTCTGGGTGGAAGTTAATGAAAAGATGGGACATTGTGGGTGAATTAGATCATTAAAACTCTAGCTTGCATAATATGTACTTTTATACCAGACTAAAGACTACATCAGTGTCTTTCTGACAACACCTCTAATGGGTCTATGAtgaataaataatgattttttttcAGATGGTTTATTTCTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU341120 True 1993 lncRNA 0.39 2 78525626 78527658

Neighbor

gene id symbol gene type direction distance location
LOC110520639 LOC106586860 coding downstream 284442 78235039 ~ 78241184 (-)
LOC110520637 LOC106586872 coding downstream 298200 78219202 ~ 78227426 (-)
LOC110520638 LOC106586858 coding downstream 304900 78208473 ~ 78220726 (-)
crfb4 crfb4 coding downstream 333960 78174200 ~ 78191666 (-)
LOC110520635 LOC101867533 coding downstream 387102 78112838 ~ 78138524 (-)
LOC110505446 LOC106586894 coding upstream 1444971 79971886 ~ 79987627 (-)
LOC110504879 LOC106586892 coding upstream 1480227 80007885 ~ 80248467 (-)
LOC110520643 LOC106586888 coding upstream 1780761 80308419 ~ 80335869 (-)
LOC110520645 LOC106586879 coding upstream 1889291 80402867 ~ 80421221 (-)
LOC110520647 LOC106595942 coding upstream 1901133 80428791 ~ 80432982 (-)
G300674 NA non-coding downstream 23863 78498846 ~ 78501763 (-)
G300669 NA non-coding downstream 32950 78491234 ~ 78492676 (-)
G300667 NA non-coding downstream 40477 78483497 ~ 78485149 (-)
G300660 NA non-coding downstream 49386 78475944 ~ 78476240 (-)
G300580 NA non-coding downstream 69546 78455719 ~ 78456080 (-)
G300736 NA non-coding upstream 83310 78610968 ~ 78611213 (-)
G300741 NA non-coding upstream 88943 78616601 ~ 78617518 (-)
G300754 NA non-coding upstream 93828 78621486 ~ 78663312 (-)
G300774 NA non-coding upstream 142375 78670033 ~ 78670301 (-)
G300783 NA non-coding upstream 156413 78684071 ~ 78684574 (-)
G300470 NA other downstream 231406 78293783 ~ 78294220 (-)
G300251 NA other downstream 490608 78034485 ~ 78035018 (-)
G300200 NA other downstream 542422 77928486 ~ 77983204 (-)
LOC110520626 ndufv3 other downstream 674860 77844666 ~ 77850842 (-)
pknox1.1 pknox1 other downstream 686411 77832447 ~ 77844072 (-)
G301283 NA other upstream 575691 79103349 ~ 79290938 (-)
G301282 NA other upstream 694440 79222098 ~ 79223310 (-)
G301452 NA other upstream 922430 79450088 ~ 79450472 (-)
G301453 NA other upstream 923050 79450708 ~ 79450970 (-)
G301928 NA other upstream 1416393 79944051 ~ 79944434 (-)

Expression


Co-expression Network