G302659


Basic Information

Item Value
gene id G302659
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80684729 ~ 80688496 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU343412
caacGATGCCCCCGGACAGGTCCACAtgggcaggatataaccccacccactttgccaaagcacagtccccacaccactagagggatatcttcaaccaccaacctattaccctgagacaaggccgagtatagcccatgaagatctcccccacggcacgaaccccgacaggaagatcacgtcagtgactcaacccactcaagtgacgcacccctcctagggacggcatggaagagcaccagtaagccagtgactcagccccccgtaatagggtcagaggcagagaatcccagtggagaaagaggagaaccggccaggcagagacagcaaggacggttcgtcgctccagtgcctttcacCCCCATATGCCTTGAAATATGCAGATCGACGGATTACAAGTAAACGTACATTGTAAAACTTCTGACTTTATAGCACTTTCAGAAGGCATAAATTATTAACTCATTGTCAACGtgactctgccgttgtgctgtagaatttgtgaattttgtgTCTTGTATAATACACCGAGTTTGACGGTGAGTTTATACTTGGATAAAGTGTACATTTTTTGTTAACTGTAATTCAGTTGGTTAtgttccaacattccctccatcttgtgccgatatcagttattttttaaatcttggttccaatagtttgtATATTTTTCTTAGAGGTTGTCAGTTGGATAGGCTCTGTGAAAGGTTTTCTATATCTTACCTGTCATATGAGTGTATTTTTCTGACCCAGATACGATTCCCTCAATATTTCTCTGCTGTCCAAAAGCTTTCAGGTTGAGTTTTCGTGATATACAACTTTTAGGTTGCAGGAagttttcataccccttgatttattgcacattttgttgttacagcctaaatttctAAATGGATTATATgtgttttctcacccatctacacataataacCCATTGTGACAAAGtgtaaacatgattttagaaatgtttgcaaatgttttgaaaatgaaatacagaattatctaatttacataagtttgTAGAAGCAGCTCTGACAGCTGTGgggctttctgggtaagtctcttaagagctttgcacacctggattgtacaatatttgcacattaataTTTTCAAAAATGTTTCAGGCTCTGTCACGTTGGTTGttcatcattgctagacagccttTTTCAAGTCTTTCCATAGATGCTCAAGCAGATTGAAGTCGAAACTGTAACTAGGTCACTCAGGAAAATTCTATGTTGTCTTGGAAAGctactccagtgtttatttggccttgtgttttaggttattgttctgctgaaaggtgcatttgtctcccagtgtctgtgggaaagcagactgaaccaggttttcccctAGGAttatgcctgtgcttagctctattccatttcatTTTATCCCCAAACAAatgtccttgccgatgacaagcatacccataacatgatgcagcgacGACCATGCTTGAAAACATGAAGAGcgggtactcagtgatgtgttggatttgccccaaacacaaggctttgtattcaggacaaggTTAAATTCTTTTCAGTTGTTTTAGTGTATTGTTgccaacaggatgcatgttttggaatattttaacttcttttcactctgtcaattaggttagtattgtggagtaactacaatgttgttgattcaacTTCaatgttctcctatcacagccatctGTAACTGttctaaagtcaccattggcctcatggtgaaaatccctgagcggtttcctttctctccggaAATTGAGTTAGGaaagatgcctgtatctttgtagtgactgggtgtattgatacaccatccaaagtgtaattaataacttcatcatgctctaaagggatattcaatgtctgctttttaaatgttgactcatctaccaataggagcccttctttgtgaggctttgggaaaacctcccttgtctttgtggttgaatctgtgtttgaaattcacagctcgactgagagaccttacatgtaattgtgtgtggtacagaggtgaggtagtcattcaaaaatcatgtcaaagGGATATTCTCTGTCAGCTTTATTTATGTTTtagccatctaccaataggtgcccttggttgcaaggcattggaaaacctccctgatctttctGGTTGACTCTGTGTTTATAAATACACTGCTCGACTtagggactttacagataattgtatgttaaacactattattgcacacagagtgagtccatgcaagttATTATGGGACATGCACATTtgactcctgaacatatttaggcttgtcataacaaaggggttgaatacttagagacatttcatcttttcatttatttattttttaccaatTTGAAAAATTTGaaaaaacaaaattccactttgacattatgtgatATAGTGTATAGGCCAATGACACAGAATCTCAATGTCACCCATTTTAAATTCTGGCTGTAACAACAACCCActgtggaaaaggtcaaagggGGTTGTGAAtaacttctgaaggcactgtgtttgAAAACATCTACATTCTTCAgtctaaaaaaaattatattttaaaaattctgtcatggaaataataGTATTTCCTATTACAAGGTCATTAACGGTTTCTCTGCCTTTAATTTTCCATGTAGGCCTATTCTAATTCTAGAAAAGCCATCCAAGGATAGTTAGATAGGGTTGTGTTTTTAGGGAGTGATATTGGTTATTGTAGAAAACATTTAGTTTTTCTTCCATTTTTTTGTTCTAAACCATGAAGTTGTTGATTTTCTTCGCTTTTTTTCCCTTTTGAAAACGAACACGTGAAAAGATTCTGTGAAATAAAATACTTCTGGGGATTGAGAATGCGAGTGTAACAAGAGGTTCTGAAAAAATCGCGACTGACGTTATGAAAGTTGCTCTGGTTTGAACCTAAGCTCCGGGTCGTGTAAATATGAAGGCGATAAGGACCATGTACTGCATATCGTACAGTTGGGCCCATGCAAGAGCAGAGTTGAAGGCATCAACTTAGAGGTGGAAAAGGGTAACTATttgctattttgaagaatctcaaatctaaaatatattgagattagtttaacacttttttttttggttactacatgatgtgttACTTTGtcatttttgatgtcttcactattattctacaatgtaaaaataaagaaaaaacattgaatgagaaggtgttgtAAAACGtgtgactggtagtgtatataatacCGTTCAGGTAATCAGCGTGTCTCTTATGAATTTGAAATCCTGCTCTTAATCTGATTGAAGGAATTTTCCTCAAATTTGACGATTGATAATTCTCTCCGTCTTCTCGGCGGAGGAACTGTTCTGCTTGTTGACGAGTTCATCATAAACGCATCGTGCCGACAACATCAAAACAGCCTTTCCAGACTCTGAAGTCAGGAGGACTTTGAGTTTGGTTTTCAGGAACGATCAAGCACTTCGAAAAAATaataaaagggttagggttagggttagggttagccctTTCACGAGGACAGACTTCGTAAATATTGAACTTCTGACAAAATTATGCAAGATTTTAGCTTTGGGTTTATGCTGCACTTGTTTCCTTTTTAATGATGATATGACTTTATCCCTTAACACTGCATTTCTCAATTGCTCAGAAAACagatctctcaattcaattcaattcaaggggctttattggcatgggaaacatgtgttaacattgccaaagcaagtgaagtagataatatacagaagtgaaataaacaatacaaattaacagtaaacattaca

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU343412 True 3768 lncRNA 0.38 1 80684729 80688496

Neighbor

gene id symbol gene type direction distance location
hpxa hpx coding downstream 26069 80645997 ~ 80658660 (-)
LOC110520649 LOC106586884 coding downstream 131462 80551048 ~ 80553267 (-)
olig1 LOC106586885 coding downstream 159200 80524093 ~ 80525529 (-)
LOC110520647 LOC106595942 coding downstream 251747 80428791 ~ 80432982 (-)
LOC110520645 LOC106586879 coding downstream 263508 80402867 ~ 80421221 (-)
LOC110518808 fam160a2 coding upstream 108499 80796995 ~ 80874124 (-)
LOC110520653 LOC106586906 coding upstream 216544 80905040 ~ 80908349 (-)
LOC110520654 LOC106586898 coding upstream 290642 80979138 ~ 80984383 (-)
LOC110520656 LOC106586902 coding upstream 323602 81012098 ~ 81038367 (-)
si:dkey-69o16.5 pepe coding upstream 1188125 81876621 ~ 81887719 (-)
G302658 NA non-coding downstream 3863 80678598 ~ 80680866 (-)
G302663 NA non-coding downstream 46975 80636230 ~ 80637754 (-)
G302694 NA non-coding downstream 50256 80634228 ~ 80634473 (-)
G302690 NA non-coding downstream 54342 80630177 ~ 80630387 (-)
G302670 NA non-coding downstream 122189 80562331 ~ 80562540 (-)
G302706 NA non-coding upstream 630 80689126 ~ 80689338 (-)
G302673 NA non-coding upstream 103761 80792257 ~ 80794498 (-)
G302761 NA non-coding upstream 117672 80806168 ~ 80806890 (-)
G302765 NA non-coding upstream 129276 80817772 ~ 80818703 (-)
G302771 NA non-coding upstream 145898 80834394 ~ 80835906 (-)
G302660 NA other downstream 1543 80680986 ~ 80683186 (-)
G302399 LOC106581475 other downstream 176432 80507935 ~ 80508297 (-)
G302117 NA other downstream 633444 80049621 ~ 80051285 (-)
G301928 NA other downstream 740295 79944051 ~ 79944434 (-)
G302724 NA other upstream 32221 80720717 ~ 80721681 (-)
G302725 NA other upstream 33242 80721738 ~ 80722623 (-)
G303663 NA other upstream 1332892 82021388 ~ 82022265 (-)
G303665 NA other upstream 1334333 82022829 ~ 82023451 (-)
pard3bb LOC106601765 other upstream 1609260 82297732 ~ 82586082 (-)

Expression


Co-expression Network