G302673


Basic Information

Item Value
gene id G302673
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 80792257 ~ 80794498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU343427
tgtgtgtgtgtgtgtgtgtgtgtacgtgaaaGTCCATCTCTAACCCAGCCTCTATTGTCATTGGCTTTACACATACTTTCCATACTCATCCCTGGTCGATGAGTGAAACGACAATGTTTTTGCCGTTGTGTTAGGAAATCTATATCGGAACTGAAATGGACATGCCAATTGAATAACATATATATTCTTCAAGTCACCCCTCACAGCGTTCAACCACGTCCAGTGTCTCTAGGAAGACCTACACGGGTCAGATATTTGCCCCTGAGATGTCTGGGATATCCCAGGCTCCCCTTTaatttgaccttttttttttattttctttctttctttctttcttctcattGTGCAACTTCACTTCTGactgttaatttaaaaaataaaaatgttatacaCATGTTCTTGATTTGTCACAAAAGGCAGTTGTAGAGCAGGTCCCATTTTACAACACTTCTCCCAATTAACGTTGTAATGATTCATTTAATCAGTCCATTCATCTTtgtctgattgattgattgtttttatgcAGAACATCAATCAGTTTTTACATGAAGACTCACTTGTAtgaaggaaggggggggggaaAAAAAGCTGTTATTTTTTAAAAGTTGTAACAGTTGGACTATTGTGTTGAAACAACCAATCCAATCCACAAGCCATGCAAATCTACCATAAGCAATCATACGTTATGAAACGCAAAGTAGGTATACGGATACATATACAAACACTAAACTATCTTCagttgatttgattgattgactgactggtgGATGGACTGACTGATTGgtggattgactgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggatggactgactgactgattggtggatggactgactgactgattggtggatggactgactgactgaggggtCCAGTCAATGGCTGGATCTGGCGGGGTTACCATGGTAAACTTTTACAAATGAAAACGCTAAGACATTCAAGCAACCGTTTCAAATTGTATTGATTGTTTGATGTTTTGTGAGTGTGTTCAACTCTTCACGTGTGcgcgcgtgtgagagagagagagagagaggggcagaagtCGTCTTCCTCAGCAGTCGTCTTCCTCAGCACCTCTTTCCCCCCTTTACAGCCATCTCTCTGGAACTGACAGCCAAATAATTGTTTTGCCACTCCGTATGTCTCTCCCAGCGTCCAGCTTTTAATAAGATCTCCAATATTATTGTCATGAGTTCCTGGTATGTTAACTGTTCGTCGTGTTTACACCATGTGGCAGCTGTTCCATCTCTGTGACATCATGAACTGATCATGTAATCAATAATCATATGATGTTTAAGGAGTTCTGGTTGTCGTGTTTTCATTTTGATGTAAAGGGATATTGCGAGATTTTGGGGGGGGCAATTGGGCCCTTTATCAACCTTTATCAACATACCCAGAGTCAGAAGCATGTAAATACCATTTTAATGAAATGACTTCTTAACTTCCTTCGTGCTGAATGCAGAGACATGAAAATGTTATCCGTTATCTCATCTGACTCTGAGGAAGTAGAGAAAATGAATTGACAAAAATCTCGCTTTAtcactttttacatttttacgTTATGTCATCTCTTCTTTCCTACTTTTGTTTCTGCGTTGTGAAACGAAGGATAGACTTGCCCAGAGATGTTATTATGTCTCCTGGAATCTATGCAAACAGGCTTCGATTGAAACGGGAGGTGGACTGAGTCTTGTCTCtaaatcatgtagaaaccaaccAAATGGGTCTTTATAAATACGGACGCCTATGAATTAATCAACTGGATTGAATGAATTACACGCAAAATGAAGAATGTTGTAATAAATATTTTTATAATTAaaagtttaaa
>TU343428
atcCACTCAAGAAATAATCGTCCCGCGACTGAATCTGGTTGATGGTCCCTGACATATTTATTATAAACGTTGACCGTGTCAGTGTTGCAGTAGATCCCATATTTATTAGTATGTGTCCTGTTGAGCGTTGAGAAGCTAGCGAGCTGTTTTGCCAAGACACTTTAATCACTTTAATTTcagtttttataaaaaaaaaaaactgttgcaGTTGTtttaagcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtacgtgaaaGTCCATCTCTAACCCAGCCTCTATTGTCATTGGCTTTACACATACTTTCCATACTCATCCCTGGTCGATGAGTGAAACGACAATGTTTTTGCCGTTGTGTTAGGAAATCTATATCGGAACTGAAATGGACATGCCAATTGAATAACATATATATTCTTCAAGTCACCCCTCACAGCGTTCAACCACGTCCAGTGTCTCTAGGAAGACCTACACGGGTCAGATATTTGCCCCTGAGATGTCTGGGATATCCCAGGCTCCCCTTTaatttgaccttttttttttattttctttctttctttctttcttctcattGTGCAACTTCACTTCTGactgttaatttaaaaaataaaaatgttatacaCATGTTCTTGATTTGTCACAAAAGGCAGTTGTAGAGCAGGTCCCATTTTACAACACTTCTCCCAATTAACGTTGTAATGATTCATTTAATCAGTCCATTCATCTTtgtctgattgattgattgtttttatgcAGAACATCAATCAGTTTTTACATGAAGACTCACTTGTAtgaaggaaggggggggggaaAAAAAGCTGTTATTTTTTAAAAGTTGTAACAGTTGGACTATTGTGTTGAAACAACCAATCCAATCCACAAGCCATGCAAATCTACCATAAGCAATCATACGTTATGAAACGCAAAGTAGGTATACGGATACATATACAAACACTAAACTATCTTCagttgatttgattgattgactgactgattgattgattggtggattgactgactgactgattggtggatggactgactgactgattggtggatggactgactgactgattggtggatggactgactgactgaggggtCCAGTCAATGGCTGGATCTGGCGGGGTTACCATGGTAAACTTTTACAAATGAAAACGCTAAGACATTCAAGCAACCGTTTCAAATTGTATTGATTGTTTGATGTTTTGTGAGTGTGTTCAACTCTTCACGTGTGcgcgcgtgtgagagagagagagagagaggggcagaagtCGTCTTCCTCAGCAGTCGTCTTCCTCAGCACCTCTTTCCCCCCTTTACAGCCATCTCTCTGGAACTGACAGCCAAATAATTGTTTTGCCACTCCGTATGTCTCTCCCAGCGTCCAGCTTTTAATAAGATCTCCAATATTATTGTCATGAGTTCCTGGTATGTTAACTGTTCGTCGTGTTTACACCATGTGGCAGCTGTTCCATCTCTGTGACATCATGAACTGATCATGTAATCAATAATCATATGATGTTTAAGGAGTTCTGGTTGTCGTGTTTTCATTTTGATGTAAAGGGATATTGCGAGATTTTGGGGGGGGCAATTGGGCCCTTTATCAACCTTTATCAACATACCCAGAGTCAGAAGCATGTAAATACCATTTTAATGAAATGACTTCTTAACTTCCTTCGTGCTGAATGCAGAGACATGAAAATGTTATCCGTTATCTCATCTGACTCTGAGGAAGTAGAGAAAATGAATTGACAAAAATCTCGCTTTAtcactttttacatttttacgTTATGTCATCTCTTCTTTCCTACTTTTGTTTCTGCGTTGTGAAACGAAGGATAGACTTGCCCAGAGATGTTATTATGTCTCCTGGAATCTATGCAAACAGGCTTCGATTGAAACGGGAGGTGGACTGAGTCTTGTCTCtaaatcatgtagaaaccaaccAAATGGGTCTTTATAAATACGGACGCCTATGAATTAATCAACTGGATTGAATGAATTACACGCAAAATGAAGAATGTTGTAATAAATATTTTTATAATTAaaagtttaaa
>TU343429
tgtgtgtgtgtgtgtgtgtgtgtacgtgaaaGTCCATCTCTAACCCAGCCTCTATTGTCATTGGCTTTACACATACTTTCCATACTCATCCCTGGTCGATGAGTGAAACGACAATGTTTTTGCCGTTGTGTTAGGAAATCTATATCGGAACTGAAATGGACATGCCAATTGAATAACATATATATTCTTCAAGTCACCCCTCACAGCGTTCAACCACGTCCAGTGTCTCTAGGAAGACCTACACGGGTCAGATATTTGCCCCTGAGATGTCTGGGATATCCCAGGCTCCCCTTTaatttgaccttttttttttattttctttctttctttctttcttctcattGTGCAACTTCACTTCTGactgttaatttaaaaaataaaaatgttatacaCATGTTCTTGATTTGTCACAAAAGGCAGTTGTAGAGCAGGTCCCATTTTACAACACTTCTCCCAATTAACGTTGTAATGATTCATTTAATCAGTCCATTCATCTTtgtctgattgattgattgtttttatgcAGAACATCAATCAGTTTTTACATGAAGACTCACTTGTAtgaaggaaggggggggggaaAAAAAGCTGTTATTTTTTAAAAGTTGTAACAGTTGGACTATTGTGTTGAAACAACCAATCCAATCCACAAGCCATGCAAATCTACCATAAGCAATCATACGTTATGAAACGCAAAGTAGGTATACGGATACATATACAAACACTAAACTATCTTCagttgatttgattgattgactgattggtgGATGGACTGACTGATTGgtggattgactgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggattgactgactgactgattggtggatggactgactgactgattggtggatggactgactgactgattggtggatggactgactgactgaggggtCCAGTCAATGGCTGGATCTGGCGGGGTTACCATGGTAAACTTTTACAAATGAAAACGCTAAGACATTCAAGCAACCGTTTCAAATTGTATTGATTGTTTGATGTTTTGTGAGTGTGTTCAACTCTTCACGTGTGcgcgcgtgtgagagagagagagagagaggggcagaagtCGTCTTCCTCAGCAGTCGTCTTCCTCAGCACCTCTTTCCCCCCTTTACAGCCATCTCTCTGGAACTGACAGCCAAATAATTGTTTTGCCACTCCGTATGTCTCTCCCAGCGTCCAGCTTTTAATAAGATCTCCAATATTATTGTCATGAGTTCCTGGTATGTTAACTGTTCGTCGTGTTTACACCATGTGGCAGCTGTTCCATCTCTGTGACATCATGAACTGATCATGTAATCAATAATCATATGATGTTTAAGGAGTTCTGGTTGTCGTGTTTTCATTTTGATGTAAAGGGATATTGCGAGATTTTGGGGGGGGCAATTGGGCCCTTTATCAACCTTTATCAACATACCCAGAGTCAGAAGCATGTAAATACCATTTTAATGAAATGACTTCTTAACTTCCTTCGTGCTGAATGCAGAGACATGAAAATGTTATCCGTTATCTCATCTGACTCTGAGGAAGTAGAGAAAATGAATTGACAAAAATCTCGCTTTAtcactttttacatttttacgTTATGTCATCTCTTCTTTCCTACTTTTGTTTCTGCGTTGTGAAACGAAGGATAGACTTGCCCAGAGATGTTATTATGTCTCCTGGAATCTATGCAAACAGGCTTCGATTGAAACGGGAGGTGGACTGAGTCTTGTCTCtaaatcatgtagaaaccaaccAAATGGGTCTTTATAAATACGGACGCCTATGAATTAATCAACTGGATTGAATGAATTACACGCAAAATGAAGAATGTTGTAATAAATATTTTTATAATTAaaagtttaaa

Function

NR:

description
PREDICTED: uncharacterized protein LOC106582599

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU343427 False 1986 lncRNA 0.40 2 80792257 80794262
TU343428 False 2066 lncRNA 0.39 2 80792257 80794498
TU343429 True 1986 lncRNA 0.40 2 80792257 80794262

Neighbor

gene id symbol gene type direction distance location
hpxa hpx coding downstream 133597 80645997 ~ 80658660 (-)
LOC110520649 LOC106586884 coding downstream 238990 80551048 ~ 80553267 (-)
olig1 LOC106586885 coding downstream 266728 80524093 ~ 80525529 (-)
LOC110520647 LOC106595942 coding downstream 359275 80428791 ~ 80432982 (-)
LOC110520645 LOC106586879 coding downstream 371036 80402867 ~ 80421221 (-)
LOC110518808 fam160a2 coding upstream 2497 80796995 ~ 80874124 (-)
LOC110520653 LOC106586906 coding upstream 110542 80905040 ~ 80908349 (-)
LOC110520654 LOC106586898 coding upstream 184640 80979138 ~ 80984383 (-)
LOC110520656 LOC106586902 coding upstream 217600 81012098 ~ 81038367 (-)
si:dkey-69o16.5 pepe coding upstream 1082123 81876621 ~ 81887719 (-)
G302706 NA non-coding downstream 102919 80689126 ~ 80689338 (-)
G302659 NA non-coding downstream 103761 80684729 ~ 80688496 (-)
G302658 NA non-coding downstream 111391 80678598 ~ 80680866 (-)
G302663 NA non-coding downstream 154503 80636230 ~ 80637754 (-)
G302694 NA non-coding downstream 157784 80634228 ~ 80634473 (-)
G302761 NA non-coding upstream 11670 80806168 ~ 80806890 (-)
G302765 NA non-coding upstream 23274 80817772 ~ 80818703 (-)
G302771 NA non-coding upstream 39896 80834394 ~ 80835906 (-)
G302777 NA non-coding upstream 55658 80850156 ~ 80850752 (-)
G302811 NA non-coding upstream 145964 80940462 ~ 81037215 (-)
G302725 NA other downstream 69634 80721738 ~ 80722623 (-)
G302724 NA other downstream 70576 80720717 ~ 80721681 (-)
G302660 NA other downstream 109071 80680986 ~ 80683186 (-)
G302399 LOC106581475 other downstream 283960 80507935 ~ 80508297 (-)
G303663 NA other upstream 1226890 82021388 ~ 82022265 (-)
G303665 NA other upstream 1228331 82022829 ~ 82023451 (-)
pard3bb LOC106601765 other upstream 1503258 82297732 ~ 82586082 (-)
LOC110505453 LOC106586926 other upstream 1950746 82744854 ~ 82747738 (-)
G304204 LOC107714908 other upstream 2036872 82831370 ~ 82851751 (-)

Expression


Co-expression Network