Fish Transcriptome and Expression Database

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model fish

XLOC_022408 (CR354381.1)

Basic Information

Item	Value
gene id	XLOC_022408
gene name	CR354381.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007134.7
NCBI id	CM002907.2
chromosome length	46223584
location	27580164 ~ 27580292 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044212
ACTGACAGTAATCTGCCCGCAGCTAGCTCTCACCAACTCTCACATAATCACcccctgaagctaagcagggctgcgcccagtaagtacctggatgggagaccacatgggaaagctaggttgctgaccgaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000084441

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00044212	True	129	rRNA	0.54	1	27580164	27580292

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_022406	pfkma	coding	downstream	8497	27553786 ~ 27571667 (-)
XLOC_022405	larp4aa	coding	downstream	32233	27511709 ~ 27547931 (-)
XLOC_022404	asb8	coding	downstream	74003	27495091 ~ 27506161 (-)
XLOC_022403	atf7a	coding	downstream	100606	27446929 ~ 27479558 (-)
XLOC_022402	dip2ba	coding	downstream	137620	27358722 ~ 27442544 (-)
XLOC_022409	phf8	coding	upstream	11074	27591366 ~ 27608257 (-)
XLOC_022410	arf3a	coding	upstream	41728	27622020 ~ 27633730 (-)
XLOC_022411	wnt10b	coding	upstream	61179	27641471 ~ 27647769 (-)
XLOC_022412	NA	coding	upstream	72604	27652896 ~ 27675394 (-)
XLOC_022413	ikzf4	coding	upstream	102722	27683014 ~ 27695173 (-)
XLOC_022400	NA	non-coding	downstream	381069	27191956 ~ 27199095 (-)
XLOC_022396	NA	non-coding	downstream	565004	26961010 ~ 27015160 (-)
XLOC_022393	NA	non-coding	downstream	820604	26749407 ~ 26759560 (-)
XLOC_022392	CR855310.1	non-coding	downstream	904394	26675652 ~ 26675770 (-)
XLOC_022380	BX005414.1	non-coding	downstream	1787071	25789132 ~ 25793093 (-)
XLOC_022415	NA	non-coding	upstream	147003	27727295 ~ 27729454 (-)
XLOC_022416	NA	non-coding	upstream	190189	27770481 ~ 27772372 (-)
XLOC_022417	NA	non-coding	upstream	208077	27788369 ~ 27795923 (-)
XLOC_022427	NA	non-coding	upstream	852883	28433175 ~ 28453703 (-)

Expression

Co-expression Network