nkx2.1c (nkx2.1c)


Basic Information

Item Value
gene id nkx2.1c
gene name nkx2.1c
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 11391075 ~ 11393828 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124223.1
CAGAGACACAACACTACGGTCGGACTTGTTCCGCGTTCAGCCAAATTCACCTGCGGGCTAAACCATGTCCTTGAGCCCAAAGCACTCAACTCCTTTCTCAGTGACAGATATTTTAAGCCCGATCGAGGAGACCTACAGAAAGTTTGGAGGCATGGACAGTACAGGGAACCTCGCGTCTTCGCTGGGCGCATACCGACAAACTCAGGTGTCTCAACCAGGCATCCAGCAGCACGCCATGTGCCATAACACCGGGGTGGGGAGCACCTATCACATGCCACACAGCGTCTCCCAATTTTCCAGTGCCATAGGAGGCTACTGTAATGGGAGCATCGGGAATATGGGAGACCTCCCGTCTTACCAAGACACAATGAGAAACGGCGCAGCAGCAACTGCATGGTATAGCGCAAACACCGAACCCCGCTACCCAACAATTTCTAGATTCATGGGGGCTACCACAGGGATGAACATGACCGGGATGGGGACATTGGCAGGGATGGATGCCACCAAATCCATGGTCACCTTACACTCTGCGCCCAGGAGAAAACGACGGGTGCTCTTCTCTCAGGCCCAGGTGTACGAGCTGGAGAGGCGCTTTAAGCAGCAGAAATACCTGTCGGCACCCGAGAGAGAACACCTGGCAAGCATGATCCACCTGACACCGACCCAGGTAAAAATTTGGTTTCAGAACCACAGGTACAAAATGAAACGCCAGGCAAAGGACAAAGCGAACCAGCAGATTCAACAGGAGAACGGCAGTGTGTGCTCACAGCAACAGTCACCGAGGCGGGTAGCAGTCCCGGTTCTCGTGAAGGATGGCAAACCCTGCCAGAACGGGTCAAGCATAACGACGTCTGGGCAACAGCaggtgcagcagcagcagaacgCGTCCGGTGGTGCGATGACGGCATCGGGAAGTGCGGTGGTTAATCACCATAATCAGCAGGTGAATAATCCGTTATCATCCGAAGAATTGGAGGAAATGTCCCCCAGTTCCCCTATCCTACACAGCCAGATAAACATGGCTCAGACAGACGCGGCTCTCCTCGAGTACACCAATAACATGGTCAGTTCAAACCTGCTTTATGGTAGAACTTGGTAAAAGGGAGAAACCTGCCATTTTATATTTTCATTCTGGAGAATACATCAAGTGGATTTTAAGACGAATAAAAACATCGGGAAGGACAGTGATCGTTGGTGACATGGACAACAGAAGCACCATACTTCCTTGACATTTGAGAGGTGCATAGACCACCTATTTTTAAGAAAGTCGACCGTGCGTGTTTTACTTTTGAAGAGTTTTTGATAAAAAATGAGACTCCAAGCACTCGGTGACGGTGTGAAGGGAGTGAAGTTTTATTTGTTGGAATTAAATTCTTTAAGGACACATTGAGGGTATCAGGCCAAAGTCTTGTAATATTTCGATGAATGAACCTGAACTGTATATATAGTTAACACATTTCATGTGACAGTGATTGTTTTTAAACGAAATATTTGTTCGTTCATTTTTTGTAAATTACAAATGTGATGGCTGCATAGCATACATATATACAAATCACAATCCAGTTGAACTAACAATAAATTGCTTGACATGTAAGCATATCTGCTTATTCATGTGGCACATGCGGATGTAACAAAGTTGACGTGTAGGTTATAGCGCAATTTTGATTAAGACGTTGGCCTAATGCAATCACATTTGTTATTAGTCCTCATCACCCAATTATTGAACGAAAGAGTCAAAATATAATTTCCAATATTTCTTACCGTTACAAGCAGGCCTGGTTAAGTAAACAAATATTTAAGCACGTAGTGTATAGCATGATAAAGTCCCAAAATGCAAGACTATTTGCAGGAAATTTAAAATTGGACCGTGACTGATTTGGCCAAACAATGGAAAACGAAGATGAAAGGCGAGAATTTTCAAACTACTGTAATAACTGGAGCTCAATTGTTGTTTCACATTTTCAATAAATATAATTTGTTAATCGTGGGCTCTTTGATTTGAACATTTGAAATATAAGCACGCAAAAATGCTAACTATTAGTGATACATTTGCCTagtttattataataataataataataataataaggtccCATTAAATAAAGGGGCACTGAATGGCCTATTATGTATATTTGCTATGGAGCTGTCAAtccaatacattttgaattgacaaaaaaacaaaaacattcgaAAATAATTAAACCATTGTCCAAAGACTTGCTATGTTTATGATTTAGGAATATTTAGTTTACATTTTTCAATGAATGCTTCACATCAGAAAGCTTATGGCGATTGTGAGGATTGGTAGGAGGAATATGATTTGAAAATGTAAGGTATATGTGATGCAAATAGCTGAATCGTTTAATTTGGCtatatttatgaacatttgaaataAAATATTAATCTAAATTAGGGTCAATATCAACTTTACAAACAAACTGACAATGACACAATTGTCTTGACTCACTTGTATTTCACAAGTTTTACAGGCATTATTCTTAAAAATTCAGTACATAAGAACATTTTCAGAATTATTAAAAGAAAACAAGTAAAACAGCCTGAAAGACAAATATAgcgag

Function

NR:

description
transcription factor Nkx2.1c

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09342 NKX2-1, TITF1; homeobox protein Nkx-2.1

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124223.1 True 2579 mRNA 0.41 2 11391075 11393828

Neighbor

gene id symbol gene type direction distance location
LOC110522079 LOC106607678 coding upstream 12489 11376071 ~ 11378586 (+)
LOC110522077 LOC106607676 coding upstream 132557 11256307 ~ 11258518 (+)
cebpz cebpz coding upstream 148409 11233728 ~ 11242666 (+)
LOC110522075 LOC106607674 coding upstream 171172 11166761 ~ 11219903 (+)
tmem242 tmem242 coding upstream 505806 10877808 ~ 10885269 (+)
LOC110522084 LOC106607683 coding downstream 193214 11587042 ~ 11593022 (+)
cd109 cd109 coding downstream 200939 11594767 ~ 11617568 (+)
LOC110522091 senp6 coding downstream 560752 11954580 ~ 11974428 (+)
myo6a myo6 coding downstream 585393 11979221 ~ 12075119 (+)
mei4 mei4 coding downstream 824606 12218434 ~ 12264532 (+)
G319408 NA non-coding upstream 47832 11293204 ~ 11343243 (+)
G319329 NA non-coding upstream 227809 11143930 ~ 11163266 (+)
G319310 NA non-coding upstream 270216 11119640 ~ 11120859 (+)
G319273 tiam2 non-coding upstream 331382 11057316 ~ 11059693 (+)
G319459 NA non-coding downstream 272 11394100 ~ 11401976 (+)
G319460 LOC100380636 non-coding downstream 27975 11421803 ~ 11423516 (+)
G319751 NA non-coding downstream 51799 11445627 ~ 11445980 (+)
G319758 NA non-coding downstream 59911 11453739 ~ 11454034 (+)
G319760 NA non-coding downstream 62971 11456799 ~ 11457061 (+)
LOC118964431 LOC106571213 other upstream 1927578 9447091 ~ 9472617 (+)
G317265 NA other upstream 1970746 9419418 ~ 9420329 (+)
LOC110521039 NA other upstream 2160558 9212373 ~ 9241817 (+)
G316996 NA other upstream 2351906 9038700 ~ 9039169 (+)
LOC110522117 smim8 other downstream 1154642 12548411 ~ 12549119 (+)
LOC110522108 pm20d2 other downstream 1407008 12800778 ~ 12812377 (+)
LOC110521046 LOC106607715 other downstream 1586572 12928115 ~ 12981592 (+)
G321447 NA other downstream 1749119 13142947 ~ 13143443 (+)
G322645 NA other downstream 2456459 13850287 ~ 13885503 (+)

Expression


Co-expression Network