XLOC_022415


Basic Information

Item Value
gene id XLOC_022415
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27727295 ~ 27729454 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045024
GGTTGGAAAAACAAGtgtaaacacttttattgtcCTTTTCACCTCATATAAAGGAAGTGAGGAAGAACAGTTTGTCACAGAGTCGCTATCTTTGCTTTAAGGAATACaggttttaaacaaacaattaaaatgttaatttcgTTTTCTAAACATTAGTTGTTTGCTATTTTCTTTGTTCCCCAAAAGAGTTTTCCATTAACAATGTAGTacaaaaacatccatacattatGCACTAATATGGTATAATCATTCATCAATTTTTCAGAGCTGAATTGcaaatgcaaaatgcaaatgaaTTTTGTAAGAATGGAAAAAGACACAGTCTCATGTTGTACCAAACCTTTATGAACGCTAGTTCGGACCCCAAAGCATATAAAACATTCCTCAGACTTTCTTCCTTTGTATTAGCCTACACATGAGGAAATcgtacaggtttggaacaacatgtgggcataattttcacattttaagcAATGAATTACATCCACATTTGACTTTAAGCTAGATAACAGTGAGGAAAAATATATCTATGACTGAAGCAGCgataatattatgaaaatatgGTTGAGCAATAACCTTTGTATTGATGGATTTGTGGCACACTGTCCTCTACTGGCCACCACATGTAGGACATACacctaaaatgtataaataacggAATCATACAAAAGAATAAACAGtgttatcatcatcataaaaaaaaatagaagtacatcataaatactgcaccatataaaacaggggtgtccaaactcagctctggagggccggtgtcctggaaagTTTAGTACCAAccttaatcagacacacctgggctagctaatcaagctcttactaggctttctagaaacatgtgcaggtgtgttgaggcaagttggagctaaaatctgcaggacaatgGCCCTCAAGAactgagtttagacacccctgataTAAAATGAGCGGTTATcagatttggtaacactttattttgatgatccattggaatattagtagactgtctgcctaatatctgttgatactgctccttcaacagacaactttgcaagtacatgtcaacttacactaactcaaccctaaccctaacatcaacccaacagtctacttataatctaatgagaattaattggcatgtagatacaatgtaacttatattcaacaaatggaccatcaaaataaagagtgacctccgatttttaaaaaaatccacatttatcAATTACAGCTCCTGTGGTCTCTATGAAACAGGAAATTATCATGTGCGTTGATTGTCTATTCACAGAGTTCAACCTAAAAACTTATGAAATAACCAATCTTTGACCTTATTGCTtcatctagatcaggggtcaccaaacttattcctggagggccggtgtcctgcagattttagctccaaccctaatcaaacacacctaaatgagctaatcaagttcttactaggtatacttgaaacatccaggctggtgtgctgaggcaagttggagctaaaccctgcagggacaccggccctccaggaccgagattggtgacccctgatctagatcgtaagtctcaaacttgattcctggaggGCTGCAGGGTCCAGTTTTGGAAGGCAGTCAAGTCAGATTTGCATAACTGTACATAAAACGTTCACAATATAATATTGCACATTAAAGAGTCACAtatgaaaaaactaaaaatggGAACAAAAATCCCGAAACACATTCACAGTTTTCTTGGCCTAAACCTTGAAATCAttgtcagactttttttttttttttaaacatacattttacaacctaactttatataaaaaagttatGTTGAACTATTTGTCTCCAACATCACTTTCATCCCTTTTGTCAGGTTCTTCAGTTAGAAGCCAGCCAGACTGGACTTCCTCTGCCAGTGCAATGAGCACCCACAGCATAGGGTTTGTTAGATGACACTAAAAATAGTGGTATACCAGGGGAAAGCGTAGGGG
>TCONS_00045023
GGTTGGAAAAACAAGtgtaaacacttttattgtcCTTTTCACCTCATATAAAGGAAGTGAGGAAGAACAGTTTGTCACAGAGTCGCTATCTTTGCTTTAAGGAATACaggttttaaacaaacaattaaaatgttaatttcgTTTTCTAAACATTAGTTGTTTGCTATTTTCTTTGTTCCCCAAAAGAGTTTTCCATTAACAATGTAGTacaaaaacatccatacattatGCACTAATATGGTATAATCATTCATCAATTTTTCAGAGCTGAATTGcaaatgcaaaatgcaaatgaaTTTTGTAAGAATGGAAAAAGACACAGTCTCATGTTGTACCAAACCTTTATGAACGCTAGTTCGGACCCCAAAGCATATAAAACATTCCTCAGACTTTCTTCCTTTGTATTAGCCTACACATGAGGAAATcgtacaggtttggaacaacatgtgggcataattttcacattttaagcAATGAATTACATCCACATTTGACTTTAAGCTAGATAACAGTGAGGAAAAATATATCTATGACTGAAGCAGCgataatattatgaaaatatgGTTGAGCAATAACCTTTGTATTGATGGATTTGTGGCACACTGTCCTCTACTGGCCACCACATGTAGGACATACacctaaaatgtataaataacggAATCATACAAAAGAATAAACAGtgttatcatcatcataaaaaaaaatagaagtacatcataaatactgcaccatataaaacaggggtgtccaaactcagctctggagggccggtgtcctggaaagTTTAGTACCAAccttaatcagacacacctgggctagctaatcaagctcttactaggctttctagaaacatgtgcaggtgtgttgaggcaagttggagctaaaatctgcaggacaatgGCCCTCAAGAactgagtttagacacccctgataTAAAATGAGCGGTTATcagatttggtaacactttattttgatgatccattggaatattagtagactgtctgcctaatatctgttgatactgctccttcaacagacaactttgcaagtacatgtcaacttacactaactcaaccctaaccctaacatcaacccaacagtctacttataatctaatgagaattaattggcatgtagatacaatgtaacttatattcaacaaatggaccatcaaaataaagagtgacctccgatttttaaaaaaatccacatttatcAATTACAGCTCCTGTGGTCTCTATGAAACAGGAAATTATCATGTGCGTTGATTGTCTATTCACAGAGTTCAACCTAAAAACTTATGAAATAACCAATCTTTGACCTTATTGCTtcatctagatcaggggtcaccaaacttattcctggagggccggtgtcctgcagattttagctccaaccctaatcaaacacacctaaatgagctaatcaagttcttactaggtatacttgaaacatccaggctggtgtgctgaggcaagttggagctaaaccctgcagggacaccggccctccaggaccgagattggtgacccctgatctagatcgtaagtctcaaacttgattcctggaggGCAGTCAAGTCAGATTTGCATAACTGTACATAAAACGTTCACAATATAATATTGCACATTAAAGAGTCACAtatgaaaaaactaaaaatggGAACAAAAATCCCGAAACACATTCACAGTTTTCTTGGCCTAAACCTTGAAATCAttgtcagactttttttttttttttaaacatacattttacaacctaactttatataaaaaagttatGTTGAACTATTTGTCTCCAACATCACTTTCATCCCTTTTGTCAGGTTCTTCAGTTAGAAGCCAGCCAGACTGGACTTCCTCTGCCAGTGCAATGAGCACCCACAGCATAGGGTTTGTTAGATGACACTAAAAATAGTGGTATACCAGGGGAAAGCGTAGGGG

Function

GO:

id name namespace
GO:0005488 binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045024 False 1966 lncRNA 0.37 2 27727295 27729454
TCONS_00045023 True 1943 lncRNA 0.37 2 27727295 27729454

Neighbor

gene id symbol gene type direction distance location
XLOC_022414 dnajc22 coding downstream 24734 27696694 ~ 27702561 (-)
XLOC_022413 ikzf4 coding downstream 32122 27683014 ~ 27695173 (-)
XLOC_022412 NA coding downstream 51901 27652896 ~ 27675394 (-)
XLOC_022411 wnt10b coding downstream 79526 27641471 ~ 27647769 (-)
XLOC_022410 arf3a coding downstream 93565 27622020 ~ 27633730 (-)
XLOC_022416 NA coding upstream 41027 27770481 ~ 27772372 (-)
XLOC_022417 NA coding upstream 58915 27788369 ~ 27795923 (-)
XLOC_022418 acvr1ba coding upstream 71065 27800519 ~ 27822920 (-)
XLOC_022419 acvrl1 coding upstream 106193 27835647 ~ 27857104 (-)
XLOC_022420 ankrd33aa coding upstream 133353 27862807 ~ 27875140 (-)
XLOC_022408 CR354381.1 non-coding downstream 147003 27580164 ~ 27580292 (-)
XLOC_022400 NA non-coding downstream 528200 27191956 ~ 27199095 (-)
XLOC_022396 NA non-coding downstream 712135 26961010 ~ 27015160 (-)
XLOC_022393 NA non-coding downstream 967735 26749407 ~ 26759560 (-)
XLOC_022427 NA non-coding upstream 703721 28433175 ~ 28453703 (-)
XLOC_022432 CR677617.1 non-coding upstream 1456398 29185852 ~ 29257716 (-)
XLOC_022433 NA non-coding upstream 1604399 29333853 ~ 29358214 (-)

Expression


Co-expression Network