LOC110522088 (LOC106607688)


Basic Information

Item Value
gene id LOC110522088
gene name LOC106607688
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 11891326 ~ 11893699 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600181.2
CCTTTCAAAGAAGAAAATAGTGGCTGCGCAGTCTTCCGGTGTCCTTGTACGACCATACGACGACTGTTGACGTGGAGCTATGTACCGACACATTCAAgcgctccagcaggtgtcgCGGCGGACACTGAGCACCAGTGCGCGCAGGCAGGTGGAGAACAAGGTCCCACATAAACAGAAGCATTTCCAGGAGGACAATGGGATTCCAATTCATTTGAAAGGGGGTGTCAGCGACGCCATCCTGTACAGAGCAACAATGGCACTCACCATCCTAGGATCTGCATATGTCATATATGAACTGGTTTGTGCCGCTTTCCCCAAGAAGAAGGAGTGACTCCAGCTGCTGGGCTTACCTGTTCTACATGACACCCTATTAGTTGTAAAAAGTTGTCTGTGTCATCGGGGTTGATTTGGCATGTCATAATGGCTTTTGTTTCATGTTCATGGGATCAATATTTATttctgtaatttatttatttatttatttatttataactgAGGATGATTAAATATGCCTCTCATTA
>TU363169
AAATCCTTTCAAAGAAGAAAATAGTGGCTGCGCAGTCTTCCGGTGTCCTTGTACGACCATACGACGACTGTTGACGTGGAGCTATGTACCGACACATTCAAgcgctccagcaggtgtcgCGGCGGACACTGAGCACCAGTGCGCGCAGGCAGGTGGAGAACAAGGTCCCACATAAACAGAAGCATTTCCAGGAGGACAATGGGATTCCAATTCATTTGAAAGGGGGTGTCAGCGACGCCATCCTGTACAGAGCAACAATGGCACTCACCATCCTAGGATCTGCATATGTCATATATGAACTGGTTTGTGCCGCTTTCCCCAAGAAGAAGGAGTGACTCCAGCTGCTGGGCTTACCTGTTCTACATGACACCCTATTAGTTGTAAAAAGTTGTCTGTGTCATCGGGGTTGATTTGGCATGTCATAATGGCTTTTGTTTCATGTTCATGGGATCAATATTTATttctgtaatttatttatttatttatttatttataactgAGGATGATTAAATATGCCTCTCATTACCAAGTGGTCTGTTCTTTTTGTGTGTAAATTTTATATTTTAAGTACGGGACACCATAAACGTCAGTAGTGCGCAGACGAAAACCATCCTGTTGCCTCTGACCACAGAACATTGGTTGTCATTTTCTGTTAATGTGCCAACAATTTTGCATGTGGTATCGCCACCGTTTGTTGAAACCCAGCAGGTGATCTACTGGGCATGGCTGACATTTGTTGGTTTCTCTTGTCCTTTAAACTACACTGAATAAACAATGCTCACAAtagtctgtatggaggaatgttGGTGGTAGCCTACATCTGGATGTCTGGTAAGTGTTCATTAACATCAACgcaggcagaggaagaaaggcGTTAACAATGTTGTTAATCTGGTTTGCTACTGACTTTCTCATGATGGGAATTATTATCCGTGCTGTAAATGGAAAGTAATCTTGTTTTAGAAATTTCCTGAATGGATATACACACTGATCTTATTATAAACAGCATCAAAGAGAACAATTGTGC
>TU363167
AAATCCTTTCAAAGAAGAAAATAGTGGCTGCGCAGTCTTCCGGTGTCCTTGTACGACCATACGACGACTGTTGACGTGGAGCTATGTACCGACACATTCAAgcgctccagcaggtgtcgCGGCGGACACTGAGCACCAGTGCGCGCAGGCAGGTGGAGAACAAGGTCCCACATAAACAGAAGCATTTCCAGGAGGACAATGGGATTCCAATTCATTTGAAAGGGGGTGTCAGCGACGCCATCCTGTACAGAGCAACAATGGCACTCACCATCCTAGGATCTGCATATGTCATATATGAACTGGTTTGTGCCGCTTTCCCCAAGAAGAAGGAGTGACTCCAGCTGCTGGGCTTACCTGTTCTACATGACACCCTATTAGTTGTAAAAAGTTGTCTGTGTCATCGGGGTTGATTTGGCATGTCATAATGGCTTTTGTTTCATGTTCATGGGATCAATATTTATttctgtaatttatttatttat
>TU363168
AGAATCTTAAGGCTTTTTTTATAGCTCAGAAATGGAGAGAATGGTGGCTCATGTGTTGGCTACTCTCCAAGTACCCACTCCTGACCATTATGTGGCAGCATGCATAAGTGTTCGTGATGCATCAGTAAATCCTTTCAAAGAAGAAAATAGTGGCTGCGCAGTCTTCCGGTGTCCTTGTACGACCATACGACGACTGTTGACGTGGAGCTATGTACCGACACATTCAAgcgctccagcaggtgtcgCGGCGGACACTGAGCACCAGTGCGCGCAGGCAGGTGGAGAACAAGGTCCCACATAAACAGAAGCATTTCCAGGAGGACAATGGGATTCCAATTCATTTGAAAGGGGGTGTCAGCGACGCCATCCTGTACAGAGCAACAATGGCACTCACCATCCTAGGATCTGCATATGTCATATATGAACTGGTTTGTGCCGCTTTCCCCAAGAAGAAGGAGTGACTCCAGCTGCTGGGCTTACCTGTTCTACATGACACCCTATTAGTTGTAAAAAGTTGTCTGTGTCATCGGGGTTGATTTGGCATGTCATAATGGCTTTTGTTTCATGTTCATGGGATCAATATTTATttctgtaatttatttatttat

Function

NR:

description
cytochrome c oxidase subunit 7A2, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600181.2 False 521 mRNA 0.45 4 11891828 11893569
TU363169 False 1027 lncRNA 0.42 4 11891326 11893573
TU363167 False 482 TUCP 0.46 4 11891871 11893573
TU363168 True 608 lncRNA 0.46 4 11891871 11893699

Neighbor

gene id symbol gene type direction distance location
LOC110522086 col12a1 coding downstream 1857 11800390 ~ 11889971 (-)
LOC118964395 NA coding downstream 114503 11776282 ~ 11777325 (-)
LOC110522085 LOC106607684 coding downstream 297007 11593021 ~ 11594821 (-)
LOC110521043 NA coding downstream 307935 11548165 ~ 11583893 (-)
LOC110522083 LOC106607681 coding downstream 345788 11543521 ~ 11546040 (-)
LOC118964412 LOC106571270 coding upstream 1081 11894650 ~ 11900545 (-)
LOC110522090 filip1 coding upstream 10257 11903826 ~ 11950513 (-)
LOC110522089 impg1 coding upstream 179940 12073509 ~ 12106964 (-)
LOC110522094 LOC106607695 coding upstream 316198 12209767 ~ 12213323 (-)
snx14 LOC106607698 coding upstream 475570 12369139 ~ 12398431 (-)
G320404 NA non-coding downstream 34185 11856693 ~ 11857643 (-)
G320435 NA non-coding downstream 108610 11782991 ~ 11783218 (-)
G320408 NA non-coding downstream 155106 11730942 ~ 11736722 (-)
G320269 NA non-coding downstream 312610 11522467 ~ 11579218 (-)
G320246 NA non-coding downstream 368965 11490038 ~ 11522863 (-)
G320480 NA non-coding upstream 60482 11954051 ~ 11954858 (-)
G320544 NA non-coding upstream 103570 11997139 ~ 11998934 (-)
G320581 myo6 non-coding upstream 163874 12057443 ~ 12063970 (-)
G320586 NA non-coding upstream 165917 12059486 ~ 12060096 (-)
G320582 NA non-coding upstream 171030 12064599 ~ 12067671 (-)
arid1b arid1b other downstream 979050 10885486 ~ 10996157 (-)
adam17b LOC106607660 other downstream 1236377 10622094 ~ 10655451 (-)
G317635 NA other downstream 2267105 9624335 ~ 9624723 (-)
LOC110513790 LOC106607592 other downstream 2573720 9309373 ~ 9318116 (-)
LOC118964435 LOC106607592 other downstream 2609814 9280920 ~ 9282086 (-)
G320883 NA other upstream 424434 12318003 ~ 12318398 (-)
LOC110522115 LOC106571283 other upstream 652914 12545954 ~ 12547517 (-)
lyrm2 lyrm2 other upstream 1088208 12981284 ~ 12982769 (-)
LOC110522122 map3k7 other upstream 1280207 13173776 ~ 13197235 (-)
G323167 prs27 other upstream 2234920 14128489 ~ 14187171 (-)

Expression

LOC110522088(LOC106607688) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
End of interactive chart.

LOC110522088(LOC106607688) Expression in each Bioproject

Bar chart with 21 bars.
LOC110522088(LOC106607688) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 7500.
End of interactive chart.

Co-expression Network