LOC110522099 (LOC106607699)


Basic Information

Item Value
gene id LOC110522099
gene name LOC106607699
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 12348637 ~ 12368506 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600219.2
TTTTTCTAGTGTTTGAATGAGAAAATTGAGTACAACATTAACATCCGGTGACGTGTTCGTGCTCTTTGACAATGCACAGACACATTGTGCTGGCATGTAAATGGGTGTCGGAGAGAACGCAAAAGTGTTACATTTgtgtaaatgttataactcaaTTCAACAATCGCTAGAATAATCTACTTGTCGAGCTAATTGCCTTTACTGAATGTATGTCTTACTAGGTGTGTATGTATGACGCAACAGGGTTTGAACCGATGTCGATGCCAGATCTGACTGCTAACGTCTGACTGACGTCTCAAAACAAATGTGGATGTTGATTTGCTGCTTCTGTACCACAACTCTGCCGCATAGTTACGATTGTTGAATTGCGTGTGGGCATTCCTTGTCAAGTTACATCTTTTTGGCGACGAGAATAAAACTGGATCAGCATGTACAGGGCgatgtgctagctagctaagaaaCAATGGAGGtagtcagttagctagctagcttaatgAGCGACGGTGAGCAGCCGCCACTGGAGGGCAACGCCGACAACCAGCAGCACATGGAAATCGCTAATGATGATCATAGACAAGTTGGCGTAATAATGGCAACATTGGGACTATCACTGAGTTTGTGAACGACAACGAGGACTTGACGGAATATGTGGAAAGGTTGGGACACTTTCTTGGCACTTTTTCTTTGGGGCTATGTTAGAGGACATGCTCCGTGACAGATTAGTCTGTGGCATTATTGAGGACAGCATATAGTGCCGCTTGCTGGGGGAAGTCACACTGACTTTCAAGAGAGCATTGGAACTATCTCAAGGGATGGAGATGGCCACTAGTCATGTAAAAAATATTCAAAAGGCCAACAGTGTAAGTTGTGCAGTGCATCAGGTGACAAAAGAGATGGCAGGAAAAAGAGGAAAAGCAGTGGAATGTTTCAGATGTGGGGGAACACATTATGCAAACAAATTTAAGTTCAAGCATACTGTCTGTCACAATTGCAACAAAAAGGGACATTaagcaaaaaaaaaatgcagGGGTCCTAGGAGCAAGCCAGAAGGTGGGCAGGCTGGGCAAGGCAAGTTCACAGCAATGAAGCCACAGTCAACACGCACAAAGGCTTGTTCAGGTACAACCGCGTGGTTTTCGGATTGGCATCCAGACCAGCCATTTTCCAGAGGACAATGGACAATCTGCTGCAGGGGATCCCTCATGTACCAGTGTACCTGGACAACATCCTGGTTACAGAGGAGGAGCACCTCCACCATCTGTGTTAGAGAGATTCTCCAGTCAGGGCTGCACCTGAAGCGTAGCAAGTGCACATTCCAAGCACAGAGTGTGACATACCTAGGTcacactatcacagtgcagggtCTGTGTCCTGTGGAGGACAAAGTCAGGGCAATCAAGGATGCTCCAAATCCCAAGAACGTGTCTGAGCTCAGGTCGTTCCTGGGCATGTTGAACTACTATGGTAAGTTCCTCCCGGAGCTGTCAGTGTTGACTCCACTTTATCAGCTGCTCCACAAAGACTGTAAATGGAAGTGGGGGCCAGCTCAAGAGAAAGCTTGCAAGGAAGTGAAAGCACTACTACAATCAGCACAACTGAGAAACCCATTTGATTCGCCACGCACGCTGACGAGTGCTGAGAAGGGTTATTCACAGTTAGACAAGGAAGGTCTGGCCATAGTTTGCTGTGAAACGCTTCCATCAGTACCTCTGCCGTCGTCATTTCACCATATGCACTGACCACCAACCACTGATGAGCCTTTTCAGTGAATCAAGATGCATTCCTCCCATGGCTTCAGCAAGGATACAGCGCTGGGCCATCACACTGTCAGCTTACCAGTACACTGTCGTGTACAGAGTGAGGAAGGACAATGCAAACGCAGATGCGTTCAGACACCCGCTACCAGAGATGCCCACCACAACTGTGGTGCCTTCCGAGACAATTTTCCTAATGGAGAGATTGTCAAACTCACCTGTAAATTCCAAACAGATCAAACAATGGACAGACCGGGATCCTATCCTGGCACAAGTGCAAAGATTCCTTATGCAAGGCTGGCCTCCTGTAATATAGGATGATGGACTGAGACCTTATGCCAAGTGCAAAACTGAGCTGAGTGTGCAGGATGACTGCATACACTGGGGGTACAGAGTGGTTGTTCCACCCCCTGGCCGTTCACAAGTCATGGATGAGGTCCATGAGGCTCACCCGGGTGCCTCCCGGATGAAAGGTTTAGCCAGATCTTACATTTGGTGGCCTAACATGGATTAGGAAATAGAAAAAAAAGTAAAATCATGTTCTGAGTGCCAGATCAACCCTTTAGATGGCGCCACTACATCTGTGTGAGTGGCCTGATTGCCCATGGTCCAGGCTGAAAATAGACTTTGCAGGCACTTTTGTGGGCCACATGTTCCTTGTCATGGTAGACGCGCATTCCAAGTGGCTGGAGGCTCACATCATGAGCAACATCACAGCGACCACAACCATCGAAAAGCTTCGGCAGGCGTTTGTAACCTATGGTCTGCTTGACTCTCGTGTCCGACAACGCCACCTTTACCTGTGATTTGTTCCAAGAATTCATGCGGAAAAACAGGAGTCGCCATGTCCGAGTGCGCCGTTTCATCCGGCCTCAAGCAGcttagaggagaggagcaggctgTGCAGACACTGAAAGAGGGGCTCAAAAAGATGACTGGGGGAACCATTACAACTAAGCTCTCTCCGTTCCAGTACCACATCATAccacaaacaacaacaggacaGGCTCCAGCTGAGATATTGATGGGCAGAAAGCCAAAAGCTCACCTGGATGTACTATGTCCGGAGATCAAAGCACGAGTGGAATGGAAGCAGGAGAAACAAAAAGAAAGACATGACCACCTCGTGAGGGAGAGACAGTTAAAACCCAATGACACAGTCTACATCCACAACTTCACAAGCAGCCAACATTGGTTGCCAAGTACCATTCTGAGTCAGAGTGGCCCAGTCTCCTTTGTGGTCAAACTGACTGATGGTCGATTCATGCGCAGACACCAGGATCACGTTCACCTGCGCTATGACAAAGAAAATGCCATGTTTTCAGACGGAACAGCTACAGGTGGTAGTATACAAGTGGAAACCCCACAGGAAACAGTTCATGAGGAACAGGGGCATTCAGTGGTTCTTGCAGAGGGTAATGGACTTCCTCTTACAAACACCTAACCAGCTCCCGTGGCCTCAGACCCAGCTCCACTGGGACACGGCTTACCCGTGTGTTGTTGCACACCAGGAGTACAGCGCAGATCACAGCGTAGTCACGAGCCTCATGAAAGACTAACTCTGTAGTTGAGACGAAGAGGCTTGTGGTGTTAGTGTTTGTTTGGAACAGCAGACTTAGTGGAAAATAAATAAGGACtgtcattttttgtttgtttacatttacagtaaCACTAGCAGACGTTCTAAAATGTTGAAAAGAAAACACTGATGTGGTTTACTTGTTAATCATATGTTATTTTCTCACAGGGGGATTGAAATTAAGGTGGGAGAAGTGTTATAGTGTGGACATTATATAAATAATTACATTGAATATGTTATTGTACTTACCTGCAATATAGTATGATTACTATTCATGTGTTCATGGTTATTATTGGCATTGGCCTTGACATCATCAAATGGGAAACGTCATCACCCAGAGTTGTACCTGTTCAATGCGATGGTTGAGTGGGCTGTATCACTTTGCTGTGTTTGTGCATGGCTGTACACCTTTAATTAGGTtgaaagtaatattgaattgcgTGTGGGCATTCCTTATCAAGTTACTGCACACTGTAAACACATAAACCAACTCAAGCTATGTAAATGGTATGCTACGATTGGAGAAGAACACCCCTTCTTGTGTCCACGCCTTCTGGTGCAGTCAATGTACGGGTGAACTTCTGTGTTCTAATACAGTGCGCTGTCAACGACAAGATGGCAGTGAGTGAGTCTATGAAGGGTCTTCTACTCTACCTCTGCATCTGTAGTCATGTTTCTACTGTGGAAGCGTGGGAACTCACCTTGCTTCACACCAACGACGTCCACGCAAGGGTTGAGGAGACGAGCAACAGTTACGGCAAATGCACCAAGCCTCCGTGTTTTGCCGGTGTGGCAAGGAGGTTTACGAAAATACAGGAGATCCGGAGCCGGGAGAAGAACGTGATGCTGCTGGACGCAGGCGACCAATTTCAGGGAACCGTTTGGTTTAATGTATATAAGGGAGCCGAGGCTGCCTATTTTATGAATAAACTTGGCTACGATGCGATGGCTCTGGGGAATCATGAGTTTGACAATAACGTGGAGGGACTTATCAAGCCATTTCTCCAGGAGGTGAAGTGCACAGTCCTCAGTGCTAACATCAAAGCAGATGACACACTTGCCCCACACATCAGCGGGCTTTATTTCCCATATAAGATATTTGATGTTGGCTCTCAGAAAGTGGGCGTGGTTGGATACACTTCAAAGGAAACACCTGCCCTGTCACAAACGGGACCTAACTTAGTGTTTGAGGATGAGATTGATGCCCTTCAGCCCCAGGTTGACAAACTCATCACCCTGGGGGTCAACAAGATCATCGCCCTTGGTCACTCTGGCTTCGTTACGGACAAAGAAATAGCCAGAAGGGTGAAGGGCGTGGATGTGGTCATTGGAGGACACAGCAACACATTTCTGTACAACGGAGAGAAACCTTCCTCTGAGGTTCCGGCAGGTCCTTACCCCGTCATGGTGAAATCAGAGGATGGGCGGGACGTCCCTGTGGTGCAGGCCTTTGCTTTTGGGAAATATCTGGGTTACCTCAAGGTGACATTTGATGAGGCTGGCAATGTGGTCCAGTCCACAGGCAACCCCATCCTGCTGGACAGCTCTGTACCAGAGGACCCCAGTATTCTTGCTGATGTAAACAAGTGGAAAAAGGCCCTGGCAAATTACTCCTCCCAGTATGTGGGGGAGACCCTGGTGTATCTCAATGGAACGTTTGAAGAGTGCAGGTTCCGAGAGTGCAACCTGGGAAACCTAATCTGCGACGCTATGGTACACCACAACATTAAATATGCAGATGAGCTTCAGTGGAACCATGTCAGCTCCTGCATCGTCCAAGGGGGATCAATACGGTCATCCATAGATGAACGCAGCCGAAATGGTTCCATCACGATGGAAGACCTGATTGCTGTGTTGCCGTTTGGAGGCACCTATGATCTGGTGCAGCTGAAGGGCTCCACTCTGAGGAAAGCTTTTGAGCACTCTGTCAGGAGATATGGAGGGAACACAGGGGAATTCCTTCAAGTATCAGGATTCCATGTAGAGTATGATATGTCAAGGCCCCCAGGGGAGCGTGCCAGGAGTATCAGTGTGCTCTGTACAAACTGCCGGGTGCCCGTCTATGAGCCACTGGACAACAGCAGACTATACAAGGTGGTCCTGCCCTCCTACTTGGTGGAAGGAGGAGACGGATTCTCCATGATCAAAGAGGAGAAGCTGAAACACGACAGTGGTGACATGGACATTTCGGTGGTGGCCAGCTACATTACTGAGAGGAAGAAGGTGCACCCAGCTGTAGAAGGACGTATCAAGATTTCCAACTCAAATTCAGGAGGATCTGGACACACAATTCTGTTAATCCTCATAGGGCTGGTGATGGCTCTGTCTAGGAGCCTATGAGATCCCTGCCTGCAACGCTAGCTCGCCATTGGACGTGTTCTGCTCAGCATCCAAGGGAAGAGCTCAACTCTAGTTAGTCTAGTGAGAGTACAAATTAAGGACATTGGTGAAATATCCATTAACAAGGCGCTTAGATATTTCTATATAAATACTGCAGCTTGATATGCACTGTCAATGACACACTGGACTTCTCTAGACAGGTTTTGCTTTGTCAAGTCTCATGTACAGTAACTGCTGTCAAGCTCTTGCTCAGAAATTCTGTTTATATAATAGTACCAACATAAGAAAACTTCAACAGAGCTGGAAACAGATGCCCACTGGCTGTTTTAATGTGTGCAAAGTATGCTTGCTTAACCAGCATTAGTTTATGGGAGAAGATATACAATGAGCTCTGTTTTTTAAGCTCTTTGGGACCAGAGAGGTATCTAGAAAGGAGATAAATTAGTTGGTCAACCATTTGTAAATATTTATAGAATTCTTTATTATGGTCATGAACGCTATACTGTTTTTTTTATAGGATGGTATAAATTCTGATTAGGACTTTCCTAAAGTTGGTTAGCTTGTTTCAAATCCCTGTTAATTCTAAAGAAATACATTGAACCAGAGGTCATAAATTGAGTTTCTCAGTTTTAATTT

Function

NR:

description
5'-nucleotidase-like

GO:

id name namespace
GO:0046688 response to copper ion biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0046872 metal ion binding molecular_function
GO:0016788 hydrolase activity, acting on ester bonds molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K19970 NT5E, CD73; 5'-nucleotidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600219.2 True 6309 mRNA 0.47 9 12348637 12368506

Neighbor

gene id symbol gene type direction distance location
mei4 mei4 coding upstream 84105 12218434 ~ 12264532 (+)
myo6a myo6 coding upstream 273518 11979221 ~ 12075119 (+)
LOC110522091 senp6 coding upstream 374209 11954580 ~ 11974428 (+)
cd109 cd109 coding upstream 731069 11594767 ~ 11617568 (+)
LOC110522084 LOC106607683 coding upstream 755615 11587042 ~ 11593022 (+)
LOC110522100 LOC106607702 coding downstream 53834 12422340 ~ 12433780 (+)
LOC110520967 LOC106607907 coding downstream 140836 12509342 ~ 12510838 (+)
LOC110522116 LOC106607703 coding downstream 151713 12520219 ~ 12535736 (+)
LOC110522117 smim8 coding downstream 179905 12548411 ~ 12549119 (+)
LOC110522118 LOC106607706 coding downstream 192364 12560870 ~ 12564649 (+)
G320816 NA non-coding upstream 29533 12318712 ~ 12319104 (+)
G320762 NA non-coding upstream 68948 12279294 ~ 12279689 (+)
G320751 NA non-coding upstream 77015 12271394 ~ 12271622 (+)
G320710 NA non-coding upstream 81371 12266926 ~ 12267266 (+)
G320169 NA non-coding upstream 234371 12114060 ~ 12114266 (+)
G320836 LOC106607698 non-coding downstream 5936 12374442 ~ 12378884 (+)
G320852 NA non-coding downstream 12797 12381303 ~ 12383243 (+)
G320865 LOC106607700 non-coding downstream 35610 12404116 ~ 12405247 (+)
G320933 LOC106607906 non-coding downstream 72076 12440582 ~ 12440802 (+)
G320930 NA non-coding downstream 78136 12446642 ~ 12447171 (+)
LOC110522079 LOC106607678 other upstream 970881 11376071 ~ 11378586 (+)
LOC118964431 LOC106571213 other upstream 2885140 9447091 ~ 9472617 (+)
G317265 NA other upstream 2928308 9419418 ~ 9420329 (+)
LOC110521039 NA other upstream 3118120 9212373 ~ 9241817 (+)
G316996 NA other upstream 3309468 9038700 ~ 9039169 (+)
LOC110522108 pm20d2 other downstream 432330 12800778 ~ 12812377 (+)
LOC110521046 LOC106607715 other downstream 611894 12928115 ~ 12981592 (+)
G321447 NA other downstream 774441 13142947 ~ 13143443 (+)
G322645 NA other downstream 1481781 13850287 ~ 13885503 (+)

Expression


Co-expression Network