XLOC_022417


Basic Information

Item Value
gene id XLOC_022417
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 27788369 ~ 27795923 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045026
aaaaaacaattactcgagaacatgaaaacatatagaaacatatatttaaaatgcattttatttttctttacaagAAATAAAGCAGAGACAAAGAAATAAATGGAGGGCTGGGAGGGAAAGGGACAGCTGTATATAAAGAGATGCAACCTCTGACGTCAAAAAATATGTACAATTCAAAATTATATCCATACAAAACATGCCACATACAATAAAAATGACCATTTTATTCATCTTCCCTAAAAGTAGCTTTGCTGTACAGTTGcagcatcttttttttaaaaagttgatcAGGTTGAAAACCAAAATCAGGATCTATTCAGTTAATTACAACACATGTAGAGATCTTAAATAAAGAGAATTCAAAAGAACAAAGGCAGGGGGCTAGAGTTACTCAGCCTAAAATCCAGTCAGCATCTGTGCTTAATAACAGACTACCCTTAAAAGAACCAACGCTAGATTGAATGacgtataaataaaataatgctgaGTGCAATTCACATGTAATTAATGGAGATATTTTTGATTAATGAAGTCATACCATTCACTGGCTATGCTGCCTTTTCATACGTCGTATAAAACATTCACTTCTACAGGGAGGGGAGGGAGAGAAAACAACAGGACACGATTCAAAAACAGTATCATCTTGGGAGCTTCAAGACTTTCCATTTACTACTAATTAAACTGTCACTGATTCAAGGACAGGGTTCAGTAATTCACAAGCAGTagcataaataaaagaaatatatgtGAACAATATTACATAAATACACAATGCTATGCACCATTTTACTGCTGTTTCATTCGAAAACAAAAAAAGGGGATCTGTTTCCATGTAGAAGAGACTTTCCATTTCAAACATTTGACTTATTCACCGCAAGCACTCTTCCAAAATTCATTGGTGAAGACGAGAGGAAGATCAAACCCTCTTAGTTAACCTGTATATGGTCTCGTAGGGACAAAAAAtatgcagatatatatataaaaaaaacattaaatgcaaaAAACACTCTGGTTCATATACATAAAGATATTACTTAGTTTgccattttacatatatttatagatatatacacatttaGTTTTCTGATAAAATGATATCCAGTGGTTGCTTCTTTTTTCATGAATTTTATTTCTCTACAATtttgaatttgatttaaaaagGGGCTGGATAAAGAGTTTAGACCCCTATTATGTACAGTTTAtacattttgcatttatttcttaATGTGAGGTCATAAGTCGGGGGAGAAAGGAACAAAGTAGCATGGGCTATGTGGACACTTTGTTCAACTCCCTTCTTTgaaagtttgttttttaaaactgttttaaattactttaatataaaagaaaatagaaaTGCCCTTTTTAAGTCTTCCTCTGTCGCCGCGTCGAGCCTGTAGACTGTGCTACCACTATCAAACCACGATTACACATCGATTAGATACAACCGGCCGTCAGCAGGCAGAGAAAGACTCACTACAGTAAGTTTACAACAGTCCACTATCACAGAAGGGAAGAAGTTTACACCTAAGGGTCCTGTTGGAGTGACAAGATCCGAAAGGAGAGCTAATGAATGCAAGGATGTAAGGATGGGAAAACATGTCAAATGCAGTGGCAGTCTTGCATCACTAGTATTATTTGCCATAAAGTCTTTCAAATTGCACCCACGTGGATTTGCACTGTGACCCTTTGTCATTATTCGCTCCACCGTTATGAATGCGAGATGAGCATTTCTACACTAAAAAGCATGATGCGGCGGCTACATGATCGGAAATAAAAAGGTGGCCTCTGAGACACCCGTTTGAGTTTGATTGCTCGAAGTAATGCATCGTCATATTGGAACTGTCCATCTCGTTTGTATaatcaaatcaaaaaaaaaaaaacaagagttgCACTGGCTCACTATTGTAATCGTAATCAGAAAGCAAAATATAGATAGGAGCAAACCTGCTGCTTAAGTTTCCCTGCTTATCCGAGAAGGCATTTGCCATGGACACATTCCTGCCTTCCCCTTTCCACAGTAGCACTTAACAGTTTTAATACAAAGCAGTGACGTCCCACAAACTCAATGAGGTAGACTGGGTGAAATAAACCCACCTTTTTTAACTCAATATAATAAAACATCTGGTGCCTTTCGATAGTCAATAGTATTTCAGCGTATCTCGTCACAGTTCTAAGCAGAGCCACTCCAGGATTGTCTTGCCAATGTCCACGATCTTCACTGACGATTTGATGGGAAAGCATTCGGAAAGGGCGCTAGCCGAAAGGATAGGTCCAAGTTAAAGTGTACGAGTTAACTTTTCGAGTACTTACATGGCTTTAATCAAACATCTTCTCTGAGTTCTAGTCTAAGTGTATTGATATGCTATAGCTTTAGTTCTTTTGGTAGATGTTGAAGGGGTTGATTGCAGCCAGAGTCAGCTTATTGTAGGAGGAAACAGTGGAGGAAGTAGAGGTGCTTTTGGCAGAGGTGATTTTTAATCAACACGATAGATTCAAGCAGGTCTATTACCTTTGAGCTCATCTGTAAAAGGTTGTGGCATCAAAAGTTTTTTTCTCTTCAAAGCTTTGGCTCTTGTTGTAGGTAACAAAGTCTTCTTTCTGGTGACTGAGAGTGAACTTCTCTTCCTCGAATCAGAGCAGCTTATTAACTGGAAAGTAAGAATATAACAGGCTTTGGCGCAGGAGTGTTCTGGCACCAGGGAGCAAAGACGCGTTGGAATCTTTCTTTGTTAGTTCATCCACTTTCTACAATTCCAGGCTCCACAATGGCAAGGGATCTTGTGCTGATCGTCCTCAAAGTCAAACTGATAGTCATATGTCAGCTAAAAATATGATTGAGAGAGAAAGATACAAAGTGTTGAATACCAGATGTAAACAATGTCAAAAGAGTAGCATGAAAACTACTGTAACAAACCTCTTCGCCCTTCGGGATCCTGCGACTAGAAATGATGATGATCTTGTCCTCTTTGTCAAATGTCACAACTTCTGCCACACAGTTCGGTGCACAAGAATGATTGACATAACtaggaaaagaagaaaaaaaaaatcataaagcaAGTCACAGACCAAACAATTGGACTGCAAGAACAGTACGAGTACAGGATCTTACCGAGCAGGACCGCCAGTTAAGGTTGCATCAATTACATGCTCATTATTGATACGGAACATGTAGATCCCACGGTTCTAATGATAAAGACAACGGGTTTAGACAAAAAAAGTGCAGAcctaaaacatatgatggaagcTTGACAGCTACAAACCTGCTCCTCGTAAATCTTTTCTCTGCGATTTGCAACCTCATTGCGAATGATAGTGCCAATGTACTCGATGACCATGGTGTGTTTTTCAAGGTCTTTAGCAGCGTACAGACCCAGTCCCTGAATGCGAGAGCGGGCCAGGTACACATTGGTTTTCCACTCTGTCTTCAGTCGACGGTACTGAGAGGATTTGGAATGAACGAACTGCTTGCTGTATGGGGTGTTGATCTCCCCTGTAAATGTGCTCTGATAGGCTTTGGACATACTCGTGCTATTGAGGGTATGAGGCCTGAAAAGCAGAATAAATTTGCATTAGATCCTTACAATCACTATTCATACTTCAGTGAATTCATTCACATGTAAAGATAAAGGCTTAGATTTACCGTTTGCAGTGGGTGAGAATTTTTGGTTCTGATCGTGCACAACCTGTAGGATTGATCATGAGGGGAAGTTCCATAAGAGGATGGCGGCCATATCGGAATGTATAATCCTGACAGGATTCCACGCCAGGAAGCTATTCAGTGATTCGCATCACTGCATGTACAGTGAGTCCATACATCTCTTCTCCCCTGACATGCTCGGTGAAAAGTTTCAGCATGGCCGCTTCATCTCGCAGCTTGGCAACCTGATGCACAATCTTAGCCCAGATACCATCTGGAGTGGAGTCTCTGAAGTGCAGGTCTTCATACCCATGCTCCAGCACACGCACTTCAAACAGGGGCCTGCCATCCTGCTCACTGATGCGGCATCGGTAGCGACATCTGCGGTTTGGCACACGAGTGCTCCAGTAAATTCGTGTGGCCTCATAACCGACTGGATAGATAGCACTGGGTGAGTGAAACACAGCCATCTGAGAGGGCAAAAGCTGGCCCACAGCATGAAAGATGAGCCCACCAACACGGAACAAGTGAATGCGATCACCGCGTTGGAGGATGCTTGCAATCTGCTTCACCTCATCCCGCTCAATGTAAACACGTCGAAAAACAGCAAAACTGCTAAGCTCCTCTTCGCTGGGACCTTTAAGCTTGTGCTGAGTGCAGAGCATAGTTTTGTCTTTGAAAAACATGCAACGTGCCCGAATGGCACATGCAAAATGATATACATTCGGGCAGCGTAAACGGTTGCAGCTGTTAGTAGCACCCGTTTTTTGACAGTAGGCACAACGGGTGCGTAATCCACGCCGAAGGGCAACCTCCACATTAATAAGTGCACCACCCTGGGTTTCGTACACCTCTGTTGACCACAGAGCACAGTTAAGATGCACCCACAAATCAACATCAATATTAAGCAGGCGTGCAGGACCATCTGTTGCACCATCTCCCTCCTCATGGCAGAAACAGCACTTGCGCTTATCTCTAGGCAACTTATCTGGTTTCAGTGTAATGCGGAGGCGCTCCATGAGCTCTGAAACTTCACGACTGCTCTCTTTTTTAGAGCCACCTTTGCGAATAGTTATGACTATCTGGAGTCGTTTCCAGCGCAAACCTTTCCATTTTTTGACCTTAGGTCGTTGTTCTTCATCAGAAAGAGGCCTGCTACGGTGTTTGATGGATTTTAGGGATATCTCTATAGTAGGGGAGTCTAGAGGAGGAGAACTTGCTGGAGCAGAAGGTTGTTCTTGTGGTGGTGGAACAGCTATAGGTAGGACCGCAGGCTCATGAGATTCAGGCTCTACTGTAACGGGGGAGCAGTGAGATTCCTGTTTGACCAAAATTTCGGTTTTGACAGGAGCACTTGGACTTGCAGAAGGGGATGATGTAGTCTGAACAGTTGCTTCAGATTCAGGTTTGGGCTCAGGCTGAGTGGTGTTTTCGGGCTCAGCTACAGTAGATGATGGGGGTGGAGGTGGAGATGGTGAAGGAGGTGGAGATACTTCGACAGGAATAACAGGCAGGTGGCGCACATCCAGATCTGAAACATTTGTCATGTAACAGTGTTGGGCAGGTTTATCTTCTTGCTCTTGGGATTCCTGCAAAAGAAAGgtaaaaagcacaaataaatgtaatgtacctgtgaaaaaaaaaaacatttagcgaaaaaaaaagtctgaaaaacTCACCTGTTTGATAAGAGCAAGAATATCAACTTGTTTCCTCAGGGTACACCCTGGGAGGGAAACGTCAAACTGCTTAAGCCATTCTGCATCATTGCTCACAGAAGCGTCTGTCttcaa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045026 True 5433 lncRNA 0.41 3 27788369 27795923

Neighbor

gene id symbol gene type direction distance location
XLOC_022416 NA coding downstream 15997 27770481 ~ 27772372 (-)
XLOC_022415 NA coding downstream 58915 27727295 ~ 27729454 (-)
XLOC_022414 dnajc22 coding downstream 85808 27696694 ~ 27702561 (-)
XLOC_022413 ikzf4 coding downstream 93196 27683014 ~ 27695173 (-)
XLOC_022412 NA coding downstream 112975 27652896 ~ 27675394 (-)
XLOC_022418 acvr1ba coding upstream 4596 27800519 ~ 27822920 (-)
XLOC_022419 acvrl1 coding upstream 39724 27835647 ~ 27857104 (-)
XLOC_022420 ankrd33aa coding upstream 66884 27862807 ~ 27875140 (-)
XLOC_022421 sp5l coding upstream 227168 28023091 ~ 28025943 (-)
XLOC_022422 b4galnt1a coding upstream 301359 28097282 ~ 28123767 (-)
XLOC_022408 CR354381.1 non-coding downstream 208077 27580164 ~ 27580292 (-)
XLOC_022400 NA non-coding downstream 589274 27191956 ~ 27199095 (-)
XLOC_022427 NA non-coding upstream 637252 28433175 ~ 28453703 (-)
XLOC_022432 CR677617.1 non-coding upstream 1389929 29185852 ~ 29257716 (-)
XLOC_022433 NA non-coding upstream 1537930 29333853 ~ 29358214 (-)
XLOC_022440 NA non-coding upstream 1879072 29674995 ~ 29706359 (-)
XLOC_022443 NA non-coding upstream 2025278 29821201 ~ 29822565 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location