pnrc1 (pnrc1)


Basic Information

Item Value
gene id pnrc1
gene name pnrc1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 12794904 ~ 12798111 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600238.2
AGGAAGTTGTCATGCGCGATGTCCATCGCTTCTTCGCCATCTCGAGTCTTCTAAAACCTCGCGTAGAATTGGGAAACTAGCTACGCCATCAACATCGTTGAACTCGTCTTCAATGTATTATCAAAAACACACTGCAGAGGTTTTTGGACAGACTTCAGTTCCGCCAGCGACAAACTTTAGCTACTGTTAGCTGTTGATAGCGAAGTGGTAAGGTAAATAACTTAACGCTGCCTGACTATTTTTCAAAAGTTCTCTAATTTCGTCGATGTGTCCTCCCTCGCCACCTTCACGGGACTTTGAAGTCATGTTGGGCGAATCACTAAGTCACCCTATTAAAAACAATAAGCCACCCGTTTTGACATCCCACCATGTCGGGGCCAGCCTAAGCAAACCAAAGCAAGCAATGTTGAAGAAAGGTGGGAGAAAATTGCGTTCGACAACGTTGGGGTTACAGCGGACACACCAGCAAAAACCGATGAGGATCAACCCCATGCACCTGGCAGACAACAATGTCGCAGTTTCGAAATCCCCAGTGCACAGTGCCGAGTTCGCGACCAACCGGACCCAGGCGACTGCGTTGACCCTTCACAATCTTAAGCAGGGAACAAAGAAAGAGCTACTGAAGTCAAAAagtgggagagtggagagagccaCAGGACTAGCAGGCCagtctgtccacaacctcaataGACACAATCAAGATGCCCAGAATCTGAACACCCGGAGCCATAGGAGTAGGCATTCTAATGCACCTGGCAATGCTCTCTCAGTAATGAAAAACCACAGCAGCTGCCACCAGAAGCCACCCTCTGCTCCCTTCCAGCTCCTCTGTCGAGAGGAGAAGAAGTCCTTCAACTCAGCTGACAGTGCCAAGATCGTGAATGTATCCCCAGCTGAGCTTGTACCCGAGGAGGAGCTCAAAGACGGAGAGAAGATCTATGCTGGAGCTAAATTCAGCGAGCCCCCGTCTCCAAGTGTCCTGCCCAAACCACCCAGTCACTGGGTTGGTAAAACTGTCCCCCAACATTCCGACCACAGCCGTGAGAAAATGACTTTTCATTTGAAGTCTTTGCTGAAGGTTCAAGATAAACCATGATCACAATGGATGGAAAAGCTGGAACGATCCTTCTATACCTGATCAATGACAACACATTTGGCACTGAAAAACTGGACCGATAACTTAACAGCAACCGAATGTAATGAGTTTTTGATCTGTAATACAATTTCACATAGTTTTGAGCAAGCAGgcttgtttttatttgatttttaatgAACTTCTATAAACATGTAAAATGACTATatttttcatgttattttaacagAAAGTATAGTTTTGTTACTGAAGCCCAAAATATGTTCACCATGAACTGGTGCActtttttactgtaaataatgGGCTGCATTGCCCATTTTAAGGGGCATTGAACGTAAGAAAACATTTGACAAATTTGCACAAGACTGACTGAAAAACAAAACACGGGTCCCCATAGCGGCGAGCATAGAGTTGTGACGGTTTGGGGTTCTGTGAACCTCACCCCACCTGTTGTGGCTGCTATTGCCCTGAAAGCACTGTAGAGGACAGAACTCTCTAGAAGGGAGATTGTTTCACAACTCCTGTACTACAGTACACATTTTCGTCCTGTAGTACAAAAATAATCTTGCCAGCTCAACGGCCGATTGAGCTGGCTGGGTGGGCGAGATTAAGAAGATGGAGTGGCAATGCGAAAGTCTCAGAATCAATGATTCCCTTTGAAGAGGACAACTGTTGCTACCGAAAACAGACATTCAGCACTGAGTGCTTATTCTTTTAAATCTCTAGCACTGActcgttttttgtttttttaaatgctttgtgtttttatttcatgTCTTTCATTTTCCCATCTAAAGCACAGAATTATATTTACCCGAAGTGATCTTGATTATTATGTAACACCTTTGACCCTAGCTAACAGATTGTAACGGACTAATGTGATAAGATCCTGATGCTCCATTAGCTGTTACAGATTAGGTATTGTTTGGCGTACCACAGAGAATTTTTGACCAACCTTAACATGGCGACACTTCCTCAATTCCTGACAACCAGTGTCTTCTAAACGTCCATGTCTAGTTGCAGGGGGTTTGTTTTAATTTCGAAAGTGCGCCGTTACTAAATTTAAATCAATGTGTATGCcgccatcttgtctatttcaaatCTTCTCTCATTGACCAAGACAGGTGATTTGACCTCTGGAGCCAGGCAGCTGCTAGTTCGTGTTCCTTGACTCTTAGTGATGTCACAATGATGAAATTGTATTACTGTACCAAAGATCTACTCATGTTGTTGCAATTGTTAAAAGAAAATTGATTTTAGTCCAGTCACTAAATttgtattcatgttttttttttaaaacacccatctcccccccccccccccccccacatggtaattagaagaagaaaaacattttGGGGTGCATTTAATATCTAAATTGACATTAAAATATTGTCTACCCCCAA

Function

symbol description
pnrc1 Predicted to be active in nucleus. Orthologous to human PNRC1 (proline rich nuclear receptor coactivator 1).

NR:

description
proline-rich nuclear receptor coactivator 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600238.2 True 2499 mRNA 0.43 2 12794904 12798111

Neighbor

gene id symbol gene type direction distance location
LOC110522111 LOC106607707 coding upstream 213855 12574316 ~ 12581049 (+)
LOC110522118 LOC106607706 coding upstream 230255 12560870 ~ 12564649 (+)
LOC110522117 smim8 coding upstream 245785 12548411 ~ 12549119 (+)
LOC110522116 LOC106607703 coding upstream 259168 12520219 ~ 12535736 (+)
LOC110520967 LOC106607907 coding upstream 284237 12509342 ~ 12510838 (+)
LOC110522108 pm20d2 coding downstream 2667 12800778 ~ 12812377 (+)
LOC110521046 LOC106607715 coding downstream 130004 12928115 ~ 12981592 (+)
LOC110522103 casp8ap2 coding downstream 236033 13034144 ~ 13045663 (+)
LOC110522121 gja10 coding downstream 249236 13047347 ~ 13049135 (+)
LOC110520969 fut9 coding downstream 986603 13784714 ~ 13785790 (+)
G321201 NA non-coding upstream 19550 12774259 ~ 12775354 (+)
G321055 NA non-coding upstream 242068 12552601 ~ 12552836 (+)
G321054 NA non-coding upstream 242365 12552332 ~ 12552539 (+)
G321051 NA non-coding upstream 263272 12531393 ~ 12531632 (+)
G321045 NA non-coding upstream 271468 12523216 ~ 12523436 (+)
G321227 NA non-coding downstream 15490 12813601 ~ 12819677 (+)
G321228 NA non-coding downstream 16140 12814251 ~ 12818852 (+)
G321254 NA non-coding downstream 52161 12850272 ~ 12853113 (+)
G321256 LOC101472980 non-coding downstream 55809 12853920 ~ 12854586 (+)
G321323 NA non-coding downstream 167839 12965950 ~ 12966209 (+)
LOC110522079 LOC106607678 other upstream 1417148 11376071 ~ 11378586 (+)
LOC118964431 LOC106571213 other upstream 3331407 9447091 ~ 9472617 (+)
G317265 NA other upstream 3374575 9419418 ~ 9420329 (+)
LOC110521039 NA other upstream 3564387 9212373 ~ 9241817 (+)
G321447 NA other downstream 344836 13142947 ~ 13143443 (+)
G322645 NA other downstream 1052176 13850287 ~ 13885503 (+)
G325389 fabp7 other downstream 3637142 16435253 ~ 16436882 (+)

Expression


Co-expression Network