LOC110522110 (LOC106607712)


Basic Information

Item Value
gene id LOC110522110
gene name LOC106607712
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 12820195 ~ 12827767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021600235.2
ATGGGCAGGGTCAAGATCAGATTTGAGTTGTGTATCTTTGCAGGACCTGCTGTTCCAGTTGGAGTTGATGTTCAGGTGGAAAGTCTGGACACGATCTCAGAGGTTGACATGGACTTCACCATGACCCTGTATATTAGACACTACTGGAAAGACGAGCGCCTCTCTTTCCACAGCACCACCAATAAGAGCATGACCTTTGACGGGCGCCTGGTCAAGAAGATCTGGGTGCCAGACATGTTCTTTGTCCACTCCAAGAAGTCTTTCACACACGACACCACCACAGATAATGTCATGCTGAGAGTCTACCCCGATGGCAAGGTGCTCTACAGCCAAAGGGTGACAGTGACATCAATGTGCAGCATGGACTTGAGTCGCTTCCCTCTGGACACACAGACCTGCTCCCTGGAGATCGAGAGCTATGCGTACACGGATGACGATCTGATGCTCTACTGGAAGAAAGGGAACAATTCCCTGAGCACTGATGAAAATATCTCCCTCTCCCAGTTCCTCATCCAGGAGTTCCAAACCACCTCAAAACTAGCCTTCTACAGCAGCACAGGCTGGTACAACCGTCTGTATATCACCTTCACCCTGCGACGCCACATCTTCTTCTTCCTGCTCCAGACCTACTTCCCTGCGACTCTGATGGTCATGTTGTCCTGGGTGTCGTTCTGGATCGACCGTCGGGCCGTACCGGCCAGGGTTCCTCTGGGTATCACCACGGTGCTCACCATGTCCACCATCATCACTGGAGTCAACGCCTCCATGCCCAGGGTTTCCTACATCAAAGCTGTGGACATTTACCTCTGGGTCAGCTTTGTGTTTGTGTTCCTATCGGTGATAGAGTACGCTGCAGTGAACTACCTGTCTACGGTGCAAGAACGGAAGGAAAAAAAGCTACGAGAAAGGctGCCCTGCACCTGTGGCATGACCCACCCGGGCATGATGGGCAGCTACAGCGAGGAGGACGTCAACAACACGGGGAACTATGGCTGTATGCTCGAGGAGAACGGCGCCATGAAGCAACAGAGGATGATGGTTCATCTGGACATTGAGGAGAACAACCAAATCACAGGACATGTGGGCTCCAGTGCCTACAGCAGCATGTGGGTCGACACCCACGCCATAGACAAGTACTCCCGGGTCATCTTTCCAGGGTCGTATACTCTGTTTAACATCATCTACTGGTCCTGCTACCTCTAAAGATGCACAGAGTGGAACGGATGTAGTTTTCCCAGATATAGGACTTTCAAAACACAGAAAGTGTCACAGTATGTTGCAACACTCTTTATACTGTGACACTTTCTATGTTTTGAAAGTTCTATATTTTGAAAAtgtgattgctgacatgcaaagcattttgggactgtatcaacagtggactaacgcaaataccaaaatatagtttttgagCGGTATTTTCCTTTAAGCGAGGGAACAAAGCTATACCAAATAATTTCTGTAACAATAAGTACATTATTGTGCAGTTTAAATGAGAGTAGCATCCAGAATTGCATGTCTTGGCAACTTTGTAAAACGTTAATGCAATGTCTATGAAAACAGTGTCCAAATGGTTATTTCAAACtgtgctatatacagtgccttgcgaaagtattcggcccccttgaactttgcgaccttttgccac

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021600235.2 True 1648 mRNA 0.48 8 12820195 12827767

Neighbor

gene id symbol gene type direction distance location
rngtt rngtt coding downstream 28447 12646336 ~ 12791748 (-)
cnr1 LOC106607709 coding downstream 209260 12605893 ~ 12610935 (-)
akirin2 LOC100499587 coding downstream 218927 12595321 ~ 12601268 (-)
rars2 rars2 coding downstream 226050 12583584 ~ 12594145 (-)
LOC110522115 LOC106571283 coding downstream 273082 12545954 ~ 12547517 (-)
LOC110522109 gabrr2 coding upstream 23132 12850899 ~ 12891430 (-)
ube2j1 ube2j1 coding upstream 65418 12893185 ~ 12922602 (-)
lyrm2 lyrm2 coding upstream 153517 12981284 ~ 12982769 (-)
LOC110522101 mdn1 coding upstream 155159 12982926 ~ 13034097 (-)
LOC110522120 bach2 coding upstream 224338 13052105 ~ 13151000 (-)
G321631 LOC106565892 non-coding downstream 203034 12616587 ~ 12617161 (-)
G321611 NA non-coding downstream 256029 12562705 ~ 12564166 (-)
G321593 NA non-coding downstream 274593 12545281 ~ 12545602 (-)
G321592 LOC106607703 non-coding downstream 275316 12537693 ~ 12544879 (-)
G321790 NA non-coding upstream 64742 12892509 ~ 12892758 (-)
G321812 NA non-coding upstream 105581 12933348 ~ 12933617 (-)
G321813 NA non-coding upstream 106168 12933935 ~ 12934190 (-)
G321814 NA non-coding upstream 107300 12935067 ~ 12935344 (-)
G321822 NA non-coding upstream 120176 12947943 ~ 12948348 (-)
G320883 NA other downstream 501797 12318003 ~ 12318398 (-)
LOC110522088 LOC106607688 other downstream 926622 11891326 ~ 11893699 (-)
arid1b arid1b other downstream 1907417 10885486 ~ 10996157 (-)
adam17b LOC106607660 other downstream 2164744 10622094 ~ 10655451 (-)
LOC110522122 map3k7 other upstream 346009 13173776 ~ 13197235 (-)
G323167 prs27 other upstream 1300722 14128489 ~ 14187171 (-)
G324432 NA other upstream 2426097 15253864 ~ 15255008 (-)
rnf217 rnf217 other upstream 3191661 16019428 ~ 16125180 (-)

Expression


Co-expression Network